Plant FIBer expression Database

Lus10017899 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25597 39 / 0.0006 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035070
[exp]
251 / 2e-84 AT1G26140 74 / 3e-16 unknown protein
Lus10034406
[exp]
78 / 2e-17 AT1G26140 69 / 7e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111500
[exp]
52 / 4e-08 AT3G25597 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence
>Lus10017899 pacid=23148791 polypeptide=Lus10017899 locus=Lus10017899.g ID=Lus10017899.BGIv1.0 annot-version=v1.0
ATGGAGGACTGCAACCTCTTGGCTGCAGACTGTGTAGCACTATCATGCTGCTGCCAATGCTTACTCCTACAGTTCCTCATCTTTGTCTTCCTCCAGATGC
CTCGGAGGCTGCTCCATCGGACAAGAGACTACGCTAGGAGGAAACTGGCGAGGATGAGGAGGAGGAAGAAGGTAGAGACAGAGCTAAAGGAAAGCTCCAA
ACTTGGAGAAATGCTTGCTCAAATGTACCACGAGGACGAATCCATGTGCATTGACATTGGTGGCACAGAGGATTTCAAGATTGTTGAAGATCATCATCGT
GATGAACGAATGGATTGCATTGAGGAAATTGAGAGGGTGTTGGATGAATATTGTGCAAATGGTGAGTTCGGATTTGGGAGCTTCTGGAGGAAGGAGGTTT
CTAAAATGGGCTCACCACCATCATCATTGTCATTGTCGTCATCGCCGAGGTCTTGGGGGAGATCATCGGTGGCTTATTCATGTCCATCAGATAGTACTTC
ATGTTCATCAATGAGAAGTATGAGTGCTGTTGCAGCTAAGAAGAAGAAGGCGAAGAGGAGGAAAGAAGAGGGTTTGAAAGTTGTGGAGTTTGAGTTGGTT
GAAATGGTTAGTTCTTTATCTTCTTATGGATCGTTTAAGAACATTGATAGGTTGTTAGATTGTGAGAGGTGCTCTCCTGCTGCTAGTTGGAGACGCAACA
TGATATTCACATGA
AA sequence
>Lus10017899 pacid=23148791 polypeptide=Lus10017899 locus=Lus10017899.g ID=Lus10017899.BGIv1.0 annot-version=v1.0
MEDCNLLAADCVALSCCCQCLLLQFLIFVFLQMPRRLLHRTRDYARRKLARMRRRKKVETELKESSKLGEMLAQMYHEDESMCIDIGGTEDFKIVEDHHR
DERMDCIEEIERVLDEYCANGEFGFGSFWRKEVSKMGSPPSSLSLSSSPRSWGRSSVAYSCPSDSTSCSSMRSMSAVAAKKKKAKRRKEEGLKVVEFELV
EMVSSLSSYGSFKNIDRLLDCERCSPAASWRRNMIFT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26140 unknown protein Lus10017899
[exp]
0 1
AT5G03300 ADK2 adenosine kinase 2 (.1) Lus10023532
[exp]
8.6 0.8758
AT2G16230 O-Glycosyl hydrolases family 1... Lus10040461
[exp]
14.5 0.8429
AT5G18930 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmet... Lus10041241
[exp]
14.9 0.8637
AT5G03300 ADK2 adenosine kinase 2 (.1) Lus10040417
[exp]
16.5 0.8637
AT2G28200 C2H2ZnF C2H2-type zinc finger family p... Lus10022610
[exp]
19.1 0.8578
AT3G63210 MARD1 MEDIATOR OF ABA-REGULATED DORM... Lus10022073
[exp]
21.5 0.8152
AT1G02570 unknown protein Lus10025023
[exp]
24.4 0.8197
AT3G26040 HXXXD-type acyl-transferase fa... Lus10038689
[exp]
27.1 0.7827
AT4G11950 Protein of unknown function (D... Lus10006712
[exp]
30.9 0.8076
AT2G37040 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) Lus10023531
[exp]
30.9 0.8539

Lus10017899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.