Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18530 216 / 1e-72 EF hand calcium-binding protein family (.1) AT3G25600 215 / 2e-72 Calcium-binding EF-hand family protein (.1) AT3G03000 123 / 3e-36 EF hand calcium-binding protein family (.1) AT1G32250 121 / 2e-35 Calcium-binding EF-hand family protein (.1) AT4G14640 95 / 3e-25 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT5G21274 92 / 5e-24 ACAM-6, CAM6 calmodulin 6 (.1) AT3G51920 91 / 9e-24 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT1G66410 91 / 1e-23 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 91 / 1e-23 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G43810 91 / 1e-23 CAM7 calmodulin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027243 [exp] 177 / 1e-57 AT1G18530 208 / 5e-70 EF hand calcium-binding protein family (.1) Lus10004610 [exp] 124 / 3e-36 AT3G03000 243 / 3e-83 EF hand calcium-binding protein family (.1) Lus10030986 [exp] 121 / 2e-35 AT1G32250 219 / 3e-74 Calcium-binding EF-hand family protein (.1) Lus10004539 [exp] 99 / 4e-27 AT3G03000 164 / 2e-53 EF hand calcium-binding protein family (.1) Lus10034405 [exp] 95 / 2e-26 AT3G25600 78 / 2e-20 Calcium-binding EF-hand family protein (.1) Lus10039391 [exp] 94 / 7e-25 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 91 / 1e-23 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 91 / 1e-23 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 91 / 1e-23 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132800 [exp] 243 / 9e-84 AT3G25600 229 / 4e-78 Calcium-binding EF-hand family protein (.1) Potri.015G052600 [exp] 205 / 1e-68 AT1G18530 213 / 8e-72 EF hand calcium-binding protein family (.1) Potri.003G095700 [exp] 130 / 4e-39 AT3G03000 220 / 1e-74 EF hand calcium-binding protein family (.1) Potri.001G138000 [exp] 130 / 9e-39 AT3G03000 221 / 8e-75 EF hand calcium-binding protein family (.1) Potri.010G080900 [exp] 93 / 1e-24 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.016G024700 [exp] 91 / 1e-23 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 91 / 1e-23 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 91 / 1e-23 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.001G222200 [exp] 91 / 2e-23 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.005G215700 [exp] 88 / 1e-22 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10017900 pacid=23148857 polypeptide=Lus10017900 locus=Lus10017900.g ID=Lus10017900.BGIv1.0 annot-version=v1.0 ATGACAACTGCGGCGGCGGCGGCTGTCCGAGCCGACCAAATCCAGCAACTCAGGGACATCTTTATGCGCTTCGACATGGACTCCGACGGCAGCCTGACAC ACCTCGAACTCGCCGCCCTCCTCCGCTCTCTGGGGCTAAAACCCACCGGCGACCAGCTCCACTCCCTCCTCTCCAACATCGACTCCAACGGAAACGGCTA CGTCGAATTCGACGAACTGGTCTCCGCGATCCTCCCCGATTTGAACGAGGAGGTTCTCATCAACCAGGAGCAGCTGCTCGAGGTCTTCCAGTCGTTTGAT CGAGACGGCAACGGCTACATCACCGCCGCGGAGCTCGCCGGGTCCATGGCCAAGATGGGCCACCCGCTCTCGTACAAGGAGTTGTCGGAGATGATGAGGC AGGCGGATACCAATGGGGACGGCGTCATCAGTTTGCATGAGTTCGCTAACATCTTGGCCAAATCCGCCGCTGATTTCCTTGGCGTCGCCGTCCGCCGGCC GTAA
AA sequence Show only first row Show all	>Lus10017900 pacid=23148857 polypeptide=Lus10017900 locus=Lus10017900.g ID=Lus10017900.BGIv1.0 annot-version=v1.0 MTTAAAAAVRADQIQQLRDIFMRFDMDSDGSLTHLELAALLRSLGLKPTGDQLHSLLSNIDSNGNGYVEFDELVSAILPDLNEEVLINQEQLLEVFQSFD RDGNGYITAAELAGSMAKMGHPLSYKELSEMMRQADTNGDGVISLHEFANILAKSAADFLGVAVRRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25600			Calcium-binding EF-hand family...		Lus10017900 [exp]	0	1
AT2G39130			Transmembrane amino acid trans...		Lus10038702 [exp]	6.2	0.9080
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10001988 [exp]	7.2	0.9253
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10024495 [exp]	8.5	0.9268
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	15.0	0.9160
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	15.7	0.9238
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	19.8	0.9239
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	20.3	0.9071
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	23.8	0.9224
					Lus10032253 [exp]	28.5	0.9217
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	30.2	0.9149

Compare expression of checked genes

Lus10017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.