Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53500 57 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 45 / 6e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 45 / 8e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 44 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G24320 42 / 8e-05 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011313 [exp] 262 / 3e-88 AT5G53500 129 / 1e-32 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012846 [exp] 198 / 4e-65 AT5G53500 74 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000387 [exp] 185 / 1e-58 AT5G02430 53 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003206 [exp] 175 / 3e-52 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 172 / 9e-51 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 151 / 4e-43 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032436 [exp] 149 / 4e-42 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10007783 [exp] 52 / 2e-08 AT5G24320 246 / 3e-73 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10022377 [exp] 52 / 3e-08 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086600 [exp] 108 / 6e-28 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 107 / 2e-27 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 66 / 5e-13 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 59 / 1e-10 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 58 / 2e-10 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 55 / 3e-09 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 55 / 3e-09 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 39 / 0.0006 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 39 / 0.0006 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017902 pacid=23148866 polypeptide=Lus10017902 locus=Lus10017902.g ID=Lus10017902.BGIv1.0 annot-version=v1.0 ATGTTTTGGTGGGGAATTATAGTTTTTTTAAAAAGGGACTTGCTTTCTTTTGCGCTTTTCAGTGTCGCACCTCCGAACCAGATGCACTCCACTTTTACTT CAGACGGGAAGAGTTGTGTCTCGACGAGCGACGACTGGAATGCCTACATACGGACCTACGACAAACAGGAGAAGCCGTCCTCTCGAGCTAAGCTTATCTG CTCATACAAGAGCTTCATTTCCCCTAATGCATCGGTCGCAATACCTTGGCGTGGGATCGAAACTGAGCCAGCTGGCACAATCTCATCCAGACGACCCCAA TCTGACCATAACCATCACAAGAGCATCATATCCTCGCCGTATTGTTTCAACATCATTCAAGGGTTTTTGCTAGATTCTCTATCCAGGGGAGCTGCAACTT GGCTAGGGGGGAATCTTCCTCATTCGAAACCGGTACTCAAATCAGAGTTGAAGTTCAATCCTCAAATGTAG
AA sequence Show only first row Show all	>Lus10017902 pacid=23148866 polypeptide=Lus10017902 locus=Lus10017902.g ID=Lus10017902.BGIv1.0 annot-version=v1.0 MFWWGIIVFLKRDLLSFALFSVAPPNQMHSTFTSDGKSCVSTSDDWNAYIRTYDKQEKPSSRAKLICSYKSFISPNASVAIPWRGIETEPAGTISSRRPQ SDHNHHKSIISSPYCFNIIQGFLLDSLSRGAATWLGGNLPHSKPVLKSELKFNPQM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53500			Transducin/WD40 repeat-like su...		Lus10017902 [exp]	0	1
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10013697 [exp]	4.4	0.7600
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10002230 [exp]	30.9	0.7201
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10027985 [exp]	31.8	0.7200
					Lus10039628 [exp]	39.6	0.7114
AT3G50780			unknown protein		Lus10016789 [exp]	41.3	0.6924
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10034704 [exp]	45.5	0.6116
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	46.6	0.7083
AT4G30850		HHP2	heptahelical transmembrane pr...		Lus10036605 [exp]	49.3	0.6695
AT4G35980			unknown protein		Lus10009388 [exp]	51.4	0.7060
AT2G40435			unknown protein		Lus10025257 [exp]	52.7	0.6985

Compare expression of checked genes

Lus10017902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.