Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 85 / 4e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 71 / 3e-14 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 66 / 1e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 66 / 1e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 64 / 5e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 63 / 1e-11 SGNH hydrolase-type esterase superfamily protein (.1) AT2G23540 62 / 3e-11 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 62 / 3e-11 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT1G29660 62 / 3e-11 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G73610 61 / 5e-11 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026647 [exp] 340 / 7e-118 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 273 / 2e-91 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023578 [exp] 211 / 4e-70 AT4G28780 84 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011312 [exp] 206 / 2e-66 AT1G29670 88 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012135 [exp] 199 / 3e-64 AT1G29670 84 / 8e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026644 [exp] 177 / 2e-54 AT4G28780 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026646 [exp] 166 / 2e-49 AT1G29670 72 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 112 / 3e-29 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10030410 [exp] 109 / 3e-28 AT5G55050 147 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104900 [exp] 89 / 1e-20 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 73 / 5e-15 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 73 / 5e-15 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 71 / 2e-14 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 69 / 2e-13 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 68 / 3e-13 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 67 / 6e-13 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 67 / 7e-13 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G102400 [exp] 66 / 1e-12 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051100 [exp] 66 / 1e-12 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017903 pacid=23148847 polypeptide=Lus10017903 locus=Lus10017903.g ID=Lus10017903.BGIv1.0 annot-version=v1.0 ATGCAAACAGTGTTCAACTCGACTGCAGCCGCGGCTTACTTGAGCAACCGTGTATACTATATCGACGTCGGAGGCAGCGACATAGTAGTGCAACTGGATA ATCTCATTTTCACCGATCCGTCGTTCTTCAGTACACTTACAAGTGAATTCGTTGGCCATGTACAGGCTCTCTACGGTATTGGAGCTCGGAAGTTCGGGGT CGTAGGACCTCAACAAATCGGGTGCAGTACAATTGCTCAAGCCCGTAGCACAACCGGGCGCTGCCGTCCAAGAGCGAATTCGATTGCGGAGGCTATCCCT TCGCGATTGGCCGTAGCTATGAACATGCTCAGAGTTACAAATCGAGATATTATTTACTTGGTCGCGAATACTTATAACATAAATAGCGACCTCACCAACT GTCACTATACGGTAACTGCCGTCGTCGTCGGTCCACGTGTAAGGAACGTTACGGGTGCATGTTGTGGGAACCGAACGACGCTATGCGTTCCGAATTCTAC TGTGTGCGGGGACCCCGATGGGTACTTGTATTGGAATCCGGCTCAACTAATCCAAAGCGTGTCGAGATTGGTTGTTGAAGCATTTTTCAGTGAAAATTTG AGATACACGGACCCTATAAGCTTTTCACGGTTGATTAACGCACCAAACTCAACTGAATGA
AA sequence Show only first row Show all	>Lus10017903 pacid=23148847 polypeptide=Lus10017903 locus=Lus10017903.g ID=Lus10017903.BGIv1.0 annot-version=v1.0 MQTVFNSTAAAAYLSNRVYYIDVGGSDIVVQLDNLIFTDPSFFSTLTSEFVGHVQALYGIGARKFGVVGPQQIGCSTIAQARSTTGRCRPRANSIAEAIP SRLAVAMNMLRVTNRDIIYLVANTYNINSDLTNCHYTVTAVVVGPRVRNVTGACCGNRTTLCVPNSTVCGDPDGYLYWNPAQLIQSVSRLVVEAFFSENL RYTDPISFSRLINAPNSTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10017903 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	7.7	1.0000
					Lus10003536 [exp]	11.7	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	13.4	1.0000
					Lus10011078 [exp]	15.1	1.0000
					Lus10011832 [exp]	17.1	1.0000
					Lus10011425 [exp]	17.5	1.0000
					Lus10022518 [exp]	18.9	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	21.9	1.0000
					Lus10023589 [exp]	24.0	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	24.5	1.0000

Compare expression of checked genes

Lus10017903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.