Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 101 / 5e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 99 / 3e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G10950 95 / 1e-21 SGNH hydrolase-type esterase superfamily protein (.1) AT3G50400 94 / 1e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 91 / 3e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 90 / 4e-20 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT3G04290 90 / 5e-20 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT4G28780 89 / 1e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 88 / 1e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 86 / 1e-18 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030411 [exp] 355 / 1e-121 AT5G55050 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030409 [exp] 346 / 4e-118 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 342 / 7e-117 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030410 [exp] 338 / 3e-115 AT5G55050 147 / 1e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 169 / 2e-49 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10026644 [exp] 166 / 8e-49 AT4G28780 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 166 / 3e-48 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036966 [exp] 165 / 7e-48 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10026647 [exp] 165 / 7e-48 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 142 / 2e-39 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 137 / 4e-37 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 119 / 9e-31 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 97 / 1e-22 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 97 / 2e-22 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 93 / 4e-21 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G133766 [exp] 92 / 8e-21 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.005G205100 [exp] 91 / 3e-20 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 89 / 7e-20 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G133500 [exp] 89 / 1e-19 AT3G14225 296 / 7e-98 GDSL-motif lipase 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017904 pacid=23148785 polypeptide=Lus10017904 locus=Lus10017904.g ID=Lus10017904.BGIv1.0 annot-version=v1.0 ATGGCGTCATTGGCCGCATCAGTTGTTCTTCAATGTTTGATTTGGATTGTGTTTCTGATCAACGATCGTCACTTCTGTTCGGCTTCAGTCGTGGCTGTGT TCGTAATTGGAGGATTCTCGAGCGATGTTGGCACGAACAACTACTTGGACACCCCGGAGAAGGCTAAACAGCCTTTCAACGGCATTGATTACCCTGGCTC CGTCCCCACCGGCAGAGCCAGCAACGGCAGAGTTTTGATCGACGAAATCGCCGCCGGTGGTGCCAACATGGCGTCTGCCGGAGGTGGAATTATCAACTCG ATACCTGGAGCGCTTCCCTTGGGAGTGCAGCTGGCCCAGTTATTGACGGTCTTCGGGAACCTGACAGCTAGGTTGGGCGCACAGGCCGCGGCCAACTACT TGAACCAGAGTGTGTGCGTGGTCTCCCCGGCAAGCGCTGACATTGTCGTGCAAGCACGAAATGCCAGCGCCATCACAGACCAGACCTTCATCGCCAGGCT TGTGCTCGAAACAATTCGTTATATTCGGACTATATATGCAAACGGAGTCAGGAGGTTCGCGATAGTGACACCTCCATCGCTCGGATGTAGCCCATACGGT CGGACTTTGAACCCAGATGGGCGCGGGTACTGCTTCGCCAGAGCCGATTCTCTAGTAGAACGCTTCATCGACCGCCTCAATCTAGCCTTGGAACAGCAAA GCTTTTCGTCTCCCGCCCTCGTGTATGCGATTGGAGATGCTTACAGGGTCAATTTACTTCACATCAACAATCCTACACCATTTGGTTTCGCGAATGTGAG AGATGCCTGTTGCGGGACCGGAACGTTGCCCTGTACGCGGACTTCAAGTCTGTGTGGAAACCGTGAAGTACGCAACGGGTACTTGTACTGGAGCCAGTGG CAATTGACCGAGTACGCTGCGAGATCGACCGCTCAATTCTTCTACGGTGCTGTCTCCGGCGAGTTCGTCTACCCGATCACCTTCCGCCAGCTCGTTGAAT CATGA
AA sequence Show only first row Show all	>Lus10017904 pacid=23148785 polypeptide=Lus10017904 locus=Lus10017904.g ID=Lus10017904.BGIv1.0 annot-version=v1.0 MASLAASVVLQCLIWIVFLINDRHFCSASVVAVFVIGGFSSDVGTNNYLDTPEKAKQPFNGIDYPGSVPTGRASNGRVLIDEIAAGGANMASAGGGIINS IPGALPLGVQLAQLLTVFGNLTARLGAQAAANYLNQSVCVVSPASADIVVQARNASAITDQTFIARLVLETIRYIRTIYANGVRRFAIVTPPSLGCSPYG RTLNPDGRGYCFARADSLVERFIDRLNLALEQQSFSSPALVYAIGDAYRVNLLHINNPTPFGFANVRDACCGTGTLPCTRTSSLCGNREVRNGYLYWSQW QLTEYAARSTAQFFYGAVSGEFVYPITFRQLVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10017904 [exp]	0	1
					Lus10029249 [exp]	1.0	0.8355
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003366 [exp]	15.8	0.7150
AT3G14460			LRR and NB-ARC domains-contain...		Lus10011856 [exp]	16.2	0.7011
					Lus10032733 [exp]	16.6	0.6932
					Lus10009393 [exp]	18.7	0.7322
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006838 [exp]	19.9	0.7291
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	24.5	0.7104
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	25.5	0.6931
					Lus10022214 [exp]	25.8	0.7269
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	27.2	0.6394

Compare expression of checked genes

Lus10017904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.