Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39050 71 / 7e-15 Kinesin motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017893 [exp] 130 / 3e-38 AT4G39050 149 / 6e-41 Kinesin motor family protein (.1) Lus10017496 [exp] 112 / 2e-29 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10041958 [exp] 69 / 4e-14 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 0 / 1 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 0 / 1 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161100 [exp] 0 / 1 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 0 / 1 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017906 pacid=23148806 polypeptide=Lus10017906 locus=Lus10017906.g ID=Lus10017906.BGIv1.0 annot-version=v1.0 ATGTTCAGATTTCAGAGGAGAACAGTGGATTACGTGTGCAAAGCCAGAAGTTGGGTGAAGAAGCTTATTATGCAAAGGAACTGGCATCTGCTGCTGCAGT TGAGCTCAAATATTTGGCTGGTGAAGTCACTAAGTTATCCTTGCAGAATACTTAAGTTTGAAAAAGAACTGTTGGCCGCTCACGAGTCGTTGCAATCTCG ATCTGCCGTTGCACAAAATGGTAGCAGCTGCAAATATAATGACCGAATAAGATCCAGGAGGAAAGGCCGGTTCTCTGACAGGGGAAACGAAATGCAAATG CACTCGGATGACTTTGAGTCATGGGATCTTGATGCTAATGATATGAAGATGGAATTGCAGGCAAGGAAACAGCGAGAGGCAGCACTTGAGGCTGCCTTGG CTGAAAAGGAACTCATGGAAGATGAGTACAGGAAACGTGCTGAAGAAGCAAAATGA
AA sequence Show only first row Show all	>Lus10017906 pacid=23148806 polypeptide=Lus10017906 locus=Lus10017906.g ID=Lus10017906.BGIv1.0 annot-version=v1.0 MFRFQRRTVDYVCKARSWVKKLIMQRNWHLLLQLSSNIWLVKSLSYPCRILKFEKELLAAHESLQSRSAVAQNGSSCKYNDRIRSRRKGRFSDRGNEMQM HSDDFESWDLDANDMKMELQARKQREAALEAALAEKELMEDEYRKRAEEAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39050			Kinesin motor family protein (...		Lus10017906 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	3.3	0.7603
					Lus10008005 [exp]	6.0	0.7333
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	9.5	0.7334
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	10.3	0.7339
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10008408 [exp]	14.7	0.6506
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	15.0	0.6936
AT5G48540			receptor-like protein kinase-r...		Lus10035754 [exp]	19.6	0.6777
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	19.8	0.6903
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	20.7	0.6788
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	20.7	0.6826

Compare expression of checked genes

Lus10017906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.