Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71880 651 / 0 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G71890 639 / 0 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 636 / 0 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G66570 592 / 0 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 585 / 0 ATSUC8 sucrose-proton symporter 8 (.1) AT5G06170 582 / 0 ATSUC9 sucrose-proton symporter 9 (.1) AT5G43610 580 / 0 ATSUC6 sucrose-proton symporter 6 (.1) AT1G09960 468 / 3e-161 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 397 / 2e-132 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014821 [exp] 721 / 0 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 643 / 0 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10018915 [exp] 604 / 0 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 601 / 0 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 600 / 0 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 584 / 0 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 554 / 0 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10009428 [exp] 507 / 1e-178 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10032815 [exp] 471 / 2e-162 AT1G09960 694 / 0.0 sucrose transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 666 / 0 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 664 / 0 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 485 / 3e-168 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.008G148100 [exp] 394 / 4e-131 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.010G093600 [exp] 380 / 1e-125 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03209 [flax] [poplar] PUCC PUCC protein
Representative CDS sequence Show only first row Show all	>Lus10017910 pacid=23145653 polypeptide=Lus10017910 locus=Lus10017910.g ID=Lus10017910.BGIv1.0 annot-version=v1.0 ATGCCGGCCACCGATCAACACAAACCAAACCCACCGCCTCACATCAAAACCTCCCTCCAAACCGAAGACCCAAACTTCGTCGCCGCATCCCCACTTCGCC AAATCGCCGCCGTCGCCTCCATCGCCGCCGGTATCCAGTTCGGATGGGCCCTGCAGCTCTCCCTCCTCACCCCATACGTTCAGCTCCTGGGAATCCCCCA CAAATGGGCCTCCCTCATCTGGCTCTGTGGGCCCATCTCCGGCATGATCGTCCAGCCCATAGTCGGCTACCATAGCGACCGCTGCACTTCCCGCTTCGGC CGCCGTCGCCCCTTCATCGTTGGTGGCACCGCCTGCGTTGCCATAGCGGTCATCCTCATCGGGTTCGCCGCCGATATCGGCCACTCCGCTGGGGGCGACC TGGCCAAGACGTCCAAGCCGCGGGCTATCGCGGTGTTCGTGGTCGGGTTCTGGATACTTGACGTGGCTAATAACATGCTGCAGGGACCATGCCGGGCCCT GCTGGCCGATTTGTCAGGGACCAGTAGCCGGAAGACGAGGGTGGCCAACGCCTTCTTTTCCTTCTTTATGGCGGTTGGGAATGTGTTGGGGTATGCGGCT GGTTCGTATAACAAGCTTTATAAAATGTTTTCCTTCACTAAAACGACGGCGTGTGATGTCTACTGTGCTAACTTGAAGACCTGCTTCTTCATCTCCATCA CCTTGCTCCTCCTCCTCACCGTTTTAGCCCTCTGGTACGTGAGGGAGAAGCAATGGTCGCCGGAGCAAGCAACGGCAGCGGACGGGGAAGAACTCCCAGA ATCGACTGCGGAACCGATGCTGTGCGAGCTATTCACGGCGATAAAGACGATGAAGAGGCCGATGTGCATCCTGCTGGTGGTGACATGCCTGAACTGGATC GGGTGGTTTCCGTTCCTGCTCTACGACACCGACTGGATGGGCAGAGAAGTATACGGCGGGGACTCAGCTGGAAACAAAGCTCAGATCAGTGCGTACGGAC ACGGTGTCCGCGCCGGTTCGTTGGGCCTGATGCTTAACTCGGTGGTCCTCGGTGTCATGTCGCTCGGCGTGGAGTCCGTCGGCAGGTGGGTCGGCGGGGT GAAGCGGCTATGGGGCATCGTCAATTTCCTGCTAGCCATCTGCCTGGCTCTGACGGTTGTGATCAGTAAGGTGGCCGAGTCGGAACGGGAGTCCGCTGAT AGCCCAACTCCGCCGTCAACCGGTGTATTCGCCGGTGTCATGACGCTTTTCTCCGTCCTCGGTGTTCCGCTTGCAATAACTTACAGCATTCCGTTCGCCT TGGCTTCCATATTTTCTCATTCCTCCGGTACCGGACAAGGGTTATCGCTTGGAGTATTGAATCTTTCGATCGTTGTACCTCAGATGATAATATCGTTGCT GAGCGGACCGTGGGACGCACTGTTTGGAGGGGGGAATTTGCCAGCATTTGTGGTGGGAGCAATAGCAGCAGCTGCGAGTGGAATACTTGCCCTCACTTTG CTACCATCACCACCACCAGATGTTCCCACTTCCAAAACAAACCTTGCTGGTGGCTTCCATTAA
AA sequence Show only first row Show all	>Lus10017910 pacid=23145653 polypeptide=Lus10017910 locus=Lus10017910.g ID=Lus10017910.BGIv1.0 annot-version=v1.0 MPATDQHKPNPPPHIKTSLQTEDPNFVAASPLRQIAAVASIAAGIQFGWALQLSLLTPYVQLLGIPHKWASLIWLCGPISGMIVQPIVGYHSDRCTSRFG RRRPFIVGGTACVAIAVILIGFAADIGHSAGGDLAKTSKPRAIAVFVVGFWILDVANNMLQGPCRALLADLSGTSSRKTRVANAFFSFFMAVGNVLGYAA GSYNKLYKMFSFTKTTACDVYCANLKTCFFISITLLLLLTVLALWYVREKQWSPEQATAADGEELPESTAEPMLCELFTAIKTMKRPMCILLVVTCLNWI GWFPFLLYDTDWMGREVYGGDSAGNKAQISAYGHGVRAGSLGLMLNSVVLGVMSLGVESVGRWVGGVKRLWGIVNFLLAICLALTVVISKVAESERESAD SPTPPSTGVFAGVMTLFSVLGVPLAITYSIPFALASIFSHSSGTGQGLSLGVLNLSIVVPQMIISLLSGPWDALFGGGNLPAFVVGAIAAAASGILALTL LPSPPPDVPTSKTNLAGGFH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	0	1
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	1.0	0.9710
AT1G23850			unknown protein		Lus10030860 [exp]	1.4	0.9544
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	2.2	0.9467
AT4G01410			Late embryogenesis abundant (L...		Lus10030193 [exp]	4.6	0.9361
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	4.9	0.9504
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	4.9	0.9357
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	4.9	0.9388
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	5.2	0.9355
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	7.7	0.9501
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	10.0	0.9335

Compare expression of checked genes

Lus10017910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.