Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35680 181 / 3e-57 RPL21C chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) AT4G30930 69 / 6e-14 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014819 [exp] 374 / 4e-133 AT1G35680 220 / 1e-72 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Lus10015441 [exp] 71 / 3e-14 AT4G30930 217 / 7e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1) Lus10011178 [exp] 71 / 4e-14 AT4G30930 218 / 2e-70 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083400 [exp] 206 / 6e-67 AT1G35680 173 / 3e-54 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.013G112900 [exp] 201 / 6e-65 AT1G35680 157 / 6e-48 chloroplast ribosomal protein L21, Ribosomal protein L21 (.1) Potri.015G095700 [exp] 81 / 4e-18 AT4G30930 181 / 6e-56 NUCLEAR FUSION DEFECTIVE 1, Ribosomal protein L21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00829 [flax] [poplar] Ribosomal_L21p Ribosomal prokaryotic L21 protein
Representative CDS sequence Show only first row Show all	>Lus10017912 pacid=23145648 polypeptide=Lus10017912 locus=Lus10017912.g ID=Lus10017912.BGIv1.0 annot-version=v1.0 ATGGCGTCCACCTCTTACGCACTCTCACTCTGCTCTTCCTTCAATGCCCACTGCAAAATCACCTCCTCCCACCTCCAAAACATTCACTCAATCTCAAAGC CCCTCTCTTTTGCCAATCCCAATTGTGGGTCCTTCTTCAAACTTCCGCAAAGACTCGCCTTCTCTTCTAATCATCTTCCCTTGGTCGTGACCAAAGTCTC TGAAATTGAAGCTCCTTCCGTCACCGAACCGGATACGCCAGCCTCCGACTCCGAAGTTAGAGCCGAGCCAACCCAGATTGTCGATGTTGCTAAGGAAGAA GCTAAACGTGAAGAGATTTTCGCTGTTGTTATGGTGGGTGGACGACAATACATTGTAATCCCTGGAAGATTTCTCTATGTTCAGAGGTTGAAAGGCGCAA ATGTCCATGATAAGATCGCCCTGAACAAGGTGTTGCTAGTGGGAACAAAAACGACTACCTACATAGGGAAACCTGTAGTGACCAATGCAGTTGTTCATGC TGTAGTTGAAGAGCAGGGATTGAACAAGAAAGTTATTGTCTTTAAGTATAAGAAGAAGAAGAACTACAGGAGGAAGATTGGCCACAGACAGCCAAACACC AGAATCAGAATTACAGGCATCACTGGATTTGAAAACTACCCAGGTGCCACCCTCGAATCAGTAGCTGCTTCAAGTTGA
AA sequence Show only first row Show all	>Lus10017912 pacid=23145648 polypeptide=Lus10017912 locus=Lus10017912.g ID=Lus10017912.BGIv1.0 annot-version=v1.0 MASTSYALSLCSSFNAHCKITSSHLQNIHSISKPLSFANPNCGSFFKLPQRLAFSSNHLPLVVTKVSEIEAPSVTEPDTPASDSEVRAEPTQIVDVAKEE AKREEIFAVVMVGGRQYIVIPGRFLYVQRLKGANVHDKIALNKVLLVGTKTTTYIGKPVVTNAVVHAVVEEQGLNKKVIVFKYKKKKNYRRKIGHRQPNT RIRITGITGFENYPGATLESVAASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10017912 [exp]	0	1
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	1.4	0.9701
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	2.0	0.9668
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	2.8	0.9581
AT4G37510			Ribonuclease III family protei...		Lus10011533 [exp]	3.2	0.9552
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	3.9	0.9651
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	6.0	0.9476
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	6.3	0.9482
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	6.5	0.9534
AT3G23760			unknown protein		Lus10032527 [exp]	6.6	0.9319
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	7.7	0.9335

Compare expression of checked genes

Lus10017912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.