Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09580 421 / 1e-149 SNARE associated Golgi protein family (.1) AT1G71940 409 / 1e-145 SNARE associated Golgi protein family (.1.2) AT4G17790 313 / 8e-108 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014818 [exp] 445 / 7e-160 AT1G71940 374 / 2e-132 SNARE associated Golgi protein family (.1.2) Lus10000905 [exp] 316 / 8e-109 AT4G17790 387 / 2e-137 SNARE associated Golgi protein family (.1) Lus10004564 [exp] 315 / 1e-108 AT4G17790 388 / 1e-137 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 49 / 1e-06 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 49 / 2e-06 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 47 / 9e-06 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 40 / 0.001 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083500 [exp] 442 / 2e-158 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2) Potri.013G113000 [exp] 441 / 7e-158 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1) Potri.003G094000 [exp] 328 / 9e-114 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.001G140200 [exp] 322 / 1e-111 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 42 / 0.0003 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 41 / 0.0007 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.001G070800 [exp] 40 / 0.0008 AT1G44960 278 / 2e-94 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10017913 pacid=23145643 polypeptide=Lus10017913 locus=Lus10017913.g ID=Lus10017913.BGIv1.0 annot-version=v1.0 ATGGCGGCACCTCGAAGTATTGTGGTGGAAATTGGGGGTTTGACTGGGAGTACCGGCGGCATTAACAGGATTGGAATGAGGGACGAAGAGAAGGCCAAAG ATGACGATTCTCCGTCCAGCAAGAAATCTAAGTTGGAGAGGTTCCCCTGTTCTAGTTGGGAATTCGCTACTGCTATCTCCGTTTTCCTCTTCTTCTCCAC GGGTTTGTTCTGCATATACCGTACAATGCCTGCTGCCGAGTACGGGAAGCTCAAAATGCCTCGCACTGTCTCGGATCTCCGATTGCTCAAAGAACATCTT GGAACATATGCAAAAGATCATCCCGTACAGTTCATTCTCGGCTACTGCTCAACATACATCTTCATGCAGACCTTCATGATTCCAGGAACAATTTTCATGT CATTGCTTGCTGGAGCTCTATTTGGTGTTATTAGGGGACTTTTCTTGGTTGTTTTCAATGCAACGGCGGGAGCATCTTCTTGCTTCTTTCTGTCTAAGCT GATCGGCCGTCCTCTCGTTAGCTGGTTGTGGCCTGATAAGTTGAGATTTTTCCAAGGAGAGATAGTAAAACGTCGGGAAAAGCTACTGCATTACATGCTC TTCTTGAGGATAACACCTACGTTGCCTAACTTATTCATCAATTTAGCATCTCCTATCGTTGACATACCGTTTCATATTTTCTTTTTGGCTACTTTGATTG GTCTCATCCCAGCATCTTATATTACTGTGAGGGCCGGGCTTGCGCTTGGGGATCTGAAGTCGGTGAAAGATCTATACGATTTCAAAACGTTATCAGTGCT GTTCATCATTGGCTCCATCATCATATTCCCTACACTCTTGAAAAGAAAGCGGATATACGAATGA
AA sequence Show only first row Show all	>Lus10017913 pacid=23145643 polypeptide=Lus10017913 locus=Lus10017913.g ID=Lus10017913.BGIv1.0 annot-version=v1.0 MAAPRSIVVEIGGLTGSTGGINRIGMRDEEKAKDDDSPSSKKSKLERFPCSSWEFATAISVFLFFSTGLFCIYRTMPAAEYGKLKMPRTVSDLRLLKEHL GTYAKDHPVQFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLFLVVFNATAGASSCFFLSKLIGRPLVSWLWPDKLRFFQGEIVKRREKLLHYML FLRITPTLPNLFINLASPIVDIPFHIFFLATLIGLIPASYITVRAGLALGDLKSVKDLYDFKTLSVLFIIGSIIIFPTLLKRKRIYE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09580			SNARE associated Golgi protein...		Lus10017913 [exp]	0	1
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	3.3	0.8231
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	9.3	0.8178
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	13.3	0.7601
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	14.1	0.7937
AT4G17080			Histone H3 K4-specific methylt...		Lus10028158 [exp]	14.7	0.7840
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	15.0	0.7694
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	15.1	0.8011
AT1G50740			Transmembrane proteins 14C (.1...		Lus10019624 [exp]	19.1	0.7726
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	19.4	0.7941
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	22.6	0.7954

Compare expression of checked genes

Lus10017913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.