Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014817 [exp] 225 / 1e-75 ND 39 / 5e-04 Lus10000907 [exp] 42 / 7e-05 AT5G46795 67 / 1e-13 microspore-specific promoter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146000 [exp] 88 / 3e-22 ND / Potri.001G456100 [exp] 79 / 7e-19 ND / Potri.001G266500 [exp] 40 / 0.0001 AT1G07985 73 / 3e-17 Expressed protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017917 pacid=23145654 polypeptide=Lus10017917 locus=Lus10017917.g ID=Lus10017917.BGIv1.0 annot-version=v1.0 ATGATAGTAAGGAAAGATAATCAGGAGGTTGCACCTTTCTATCCAATTCTCTCCAGATTGGATAGCCTTGATCGAACGCTGAAGTTTCTGGACGATAAAT ATTTGCTGACGGGAAAGCCACCTCCTTGTTCTGACATGCCAAAATCGAAAGCCGTGGATGTGGAAGATGAGTGCATCAGTTTATCCTCCGCGCTAGAGCT GGTACAACAGAAAGGCAGTGTGGCGGAGAGACTGGAATTCCTCGAGAACCGCATCTTACAGTTGAGCCTAGAGATGCCAAAAGGCAACAGCACATCCAGG ACAAGCTCGTCAACGGTTTACGAAGGAGATGAAGATGGCTGTGAATGTGATAGTCAAGATTTGCTTGTAAAGCCATCACACAAGGCTCCACATCTCGTGG AAACAGTGGGCGTAGTAGTAGAAGAAGACGAAGAGGCAGGAAATGGGATGCAGGATGGAGGTGGTTGCATATCGGATGCACCACATAAAGTCATTAACTC GTCTTTCTGA
AA sequence Show only first row Show all	>Lus10017917 pacid=23145654 polypeptide=Lus10017917 locus=Lus10017917.g ID=Lus10017917.BGIv1.0 annot-version=v1.0 MIVRKDNQEVAPFYPILSRLDSLDRTLKFLDDKYLLTGKPPPCSDMPKSKAVDVEDECISLSSALELVQQKGSVAERLEFLENRILQLSLEMPKGNSTSR TSSSTVYEGDEDGCECDSQDLLVKPSHKAPHLVETVGVVVEEDEEAGNGMQDGGGCISDAPHKVINSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017917 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	1.0	0.9848
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	2.8	0.9831
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	3.9	0.9754
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	4.2	0.9674
AT5G18840			Major facilitator superfamily ...		Lus10033995 [exp]	4.4	0.9669
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	5.2	0.9733
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	5.5	0.9758
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	6.0	0.9753
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	6.5	0.9751
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	8.5	0.9727

Compare expression of checked genes

Lus10017917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.