Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51500 91 / 3e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014816 [exp] 273 / 8e-96 AT3G51500 95 / 4e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146400 [exp] 168 / 2e-54 AT3G51500 56 / 9e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017918 pacid=23145650 polypeptide=Lus10017918 locus=Lus10017918.g ID=Lus10017918.BGIv1.0 annot-version=v1.0 ATGCAAGATCCAAGATTGCCTCTATCTGGTGAGATATCCAACGGTAAACCACGAAAGAAGAAAGGCTCAACTGCTAGAGCTTCCATGCTTCAGTTGAAAG GAAACGATGTAAGAGAGTTTCAACATGGCCAGCCCCCCTTGTCTGTAAGGAATGCTCAGAAGGTGTCCAGCAAGAACTTGATGAATGAATACGCTCCTAT GTTTCAGCAAACAGAGAGGTCAAATTCAGATTCCTTGCCTGATTCTTTTGGTTCAGGGAATGATTACAGGGCACTAAGAAGGAAGTATTTGCTGTTGGAG GAGGAAAGCTTCACTCTCGGGATGGAGTTGAGAGGTATTGAAGACGAGTTTAATACTCTAGAAGATGAGAAACTTGCGTTGTTAGATCAGCTCATTGTGC TAGAAGGTCTTGTTGGCCCTTCAGAACAAGTCCCCTGA
AA sequence Show only first row Show all	>Lus10017918 pacid=23145650 polypeptide=Lus10017918 locus=Lus10017918.g ID=Lus10017918.BGIv1.0 annot-version=v1.0 MQDPRLPLSGEISNGKPRKKKGSTARASMLQLKGNDVREFQHGQPPLSVRNAQKVSSKNLMNEYAPMFQQTERSNSDSLPDSFGSGNDYRALRRKYLLLE EESFTLGMELRGIEDEFNTLEDEKLALLDQLIVLEGLVGPSEQVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51500			unknown protein		Lus10017918 [exp]	0	1
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003846 [exp]	2.2	0.8968
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	2.4	0.8701
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	9.5	0.8479
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10014295 [exp]	10.9	0.8396
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10034481 [exp]	11.9	0.8824
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	19.3	0.8144
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	21.7	0.8583
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	21.9	0.8045
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10016358 [exp]	24.0	0.8256
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	24.5	0.8540

Compare expression of checked genes

Lus10017918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.