Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65280 493 / 7e-169 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G22080 69 / 4e-13 Chaperone DnaJ-domain superfamily protein (.1.2) AT5G05750 53 / 2e-07 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G49060 53 / 3e-07 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT3G57340 52 / 8e-07 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT5G59610 48 / 7e-06 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G61770 48 / 1e-05 Chaperone DnaJ-domain superfamily protein (.1) AT3G06778 47 / 1e-05 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 45 / 6e-05 ATJ6, EMB1393 J-domain protein 6 (.1) AT3G08970 45 / 0.0001 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014815 [exp] 761 / 0 AT1G65280 522 / 4e-179 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013354 [exp] 69 / 1e-12 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10004099 [exp] 69 / 1e-12 AT5G22080 375 / 4e-133 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10037502 [exp] 58 / 8e-09 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10006515 [exp] 54 / 1e-07 AT5G49060 300 / 8e-101 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10019421 [exp] 53 / 3e-07 AT3G57340 408 / 3e-142 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10043277 [exp] 53 / 4e-07 AT3G57340 408 / 2e-140 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10040777 [exp] 52 / 5e-07 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016510 [exp] 52 / 5e-07 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083700 [exp] 550 / 0 AT1G65280 479 / 2e-163 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G215800 [exp] 73 / 4e-14 AT5G22080 324 / 5e-113 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.009G016700 [exp] 72 / 5e-14 AT5G22080 313 / 1e-108 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.010G013200 [exp] 57 / 3e-08 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.004G022600 [exp] 53 / 3e-07 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G120000 [exp] 51 / 2e-06 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G153700 [exp] 50 / 2e-06 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.010G005700 [exp] 49 / 7e-06 AT3G06778 153 / 1e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G211300 [exp] 48 / 1e-05 AT3G06778 170 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G072700 [exp] 46 / 3e-05 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12572 [flax] [poplar] DUF3752 Protein of unknown function (DUF3752) CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10017919 pacid=23145665 polypeptide=Lus10017919 locus=Lus10017919.g ID=Lus10017919.BGIv1.0 annot-version=v1.0 ATGAGAAAGAAGTCAAAGAGGAAACATAGAGATGACACGCCGACTTCCTCGTCGGGCTCCGAGGAAGATGATACCGATTATTCTTCCGAAACTTCGTCGG AGAGACGGCGGAGGCATCGGAAAGAGCGGCGGAAGAGCAATGGGAACTCAAAGCAGGACAAAGAGAAAAGGAAGAGGAAGAAAGAGCGGAAGGAAAGAGA GAATGATAGGAAGAGAAGGAAATCGAAGAAGAGGAGCTATGATTTTGACTCAGAGTCAGAGTCCGATTCTTCGGGGAGGGAGGGGTCTGTAAGCAGGCGA CCTAAGCCGGAAGCTGTGGTGAAGAAGATGTTGACGCAGTTCCCCGGCGTGGGAGGCGACTTGAAACAGCTTCTACAAATGATTGATGCTGGACAAGCTG TTGACATTGGTGGAATATCTGAGAAGACACTGGTCAAGCATTTGAAGAAGCTTTTTGTTTCCTTGAAACTCAAGGAAAAGGATGATCAGGTTTTCTTGCT CCCTTTTAATCATCCACCCACTTTGGAGATTATAGGCTCTTTGATTGAGGATCGCGTGCAACCTAGAGGGACGCAAGCTGATGATACTGCTACTAGAAAC GGTGTGCATCCGGTAGGTGTGGATGATGAGTCTGGGCAAGTGTTGGATAACACACCAATGCCATCTACTTCAACAGATATTCCTCCTCCAAGAAAGAGAA TGATGGGGCCTGAAATGCCATCATCTGAGCTACTTGCAGCTGCTGCAAAATTGACTGAAGCACAAGAGGAGCTTAGGACAGTGGAGTTGGAGGAAGATAA TGAACTGTTTGTCGGACCTCCCCTGCCTGCAATTGCTGCTGAAGCGGAATCTGTAAACGAGGCAGAACGTTTTGAAGAGGTTACAAGAATAATGGATAGC AGTGATGACTCTCCATATGATGTCGTTGGGGTGAACCATAGGATGTCTGCTGATAATATAAAGAAACGGTACTGGAAACTGTCTCTTCTTGTGCATCCAG ACAAGTGTTCTCATCCTCAAGCTCAACAAGCTTTTGTCAAATTGAATAAAGCTTTTAAGGATTTGCAAGATGTTGATAAGCGTAAGATACTGGATGAGAA AATAAAGCAGAAGGAGGAGCAAGAAGCATTTAAGGCTGAGTTGAAAGTTATGCAAGAAGCTGCTCAGTGGAGAAGATTGCAAGGTATATCTATGGAGGGT GATGATGAGCTTCTGGCAGAGCTCGAGGTTAAAGTAGCCCCAAAGAGAGATGAATGGATGACGACATTACCACCAGAAAGAAAGGCCGGTGGTGTGACCA TGCATTCGACGAAAGCATTCAGCAAGGATGTTAAAGAAGGTCGCGGTGATACTAGTGCATGGACAGATACTCCTTCGGACAGAGCTTTGAAGGCAAAAAT GAATTACCTGGAAGCGTATGATGCTGCAACAGCACTTGCTTCAAACGAAGAGGAAAAGAAACAATCGAATGCGGATGCAGATCTGGTAGACAAATACAAT AAAGCTAAACGTTCAAAGTCGTTGGTGCAGAAGCATCAAGAAGAGCTGGTTGATCAGTCGTCGTCATCGAAGAAAAAAACAAAGCAGCAGAAGCAGAAAG AGAAGGAGAAAGAAGAGTGGGCAGGACAACATCCATGGAAGCCTTGGGATCGTGATAAGGACCTTTCAGCTGGTAGACAGAACGTAAAGCTTGATGCCGA GAACATGGGTCAAGGCTTAACTTCGCGATTCTCATCGGCCAACTTCCAGAGGAATTTCCTTTAG
AA sequence Show only first row Show all	>Lus10017919 pacid=23145665 polypeptide=Lus10017919 locus=Lus10017919.g ID=Lus10017919.BGIv1.0 annot-version=v1.0 MRKKSKRKHRDDTPTSSSGSEEDDTDYSSETSSERRRRHRKERRKSNGNSKQDKEKRKRKKERKERENDRKRRKSKKRSYDFDSESESDSSGREGSVSRR PKPEAVVKKMLTQFPGVGGDLKQLLQMIDAGQAVDIGGISEKTLVKHLKKLFVSLKLKEKDDQVFLLPFNHPPTLEIIGSLIEDRVQPRGTQADDTATRN GVHPVGVDDESGQVLDNTPMPSTSTDIPPPRKRMMGPEMPSSELLAAAAKLTEAQEELRTVELEEDNELFVGPPLPAIAAEAESVNEAERFEEVTRIMDS SDDSPYDVVGVNHRMSADNIKKRYWKLSLLVHPDKCSHPQAQQAFVKLNKAFKDLQDVDKRKILDEKIKQKEEQEAFKAELKVMQEAAQWRRLQGISMEG DDELLAELEVKVAPKRDEWMTTLPPERKAGGVTMHSTKAFSKDVKEGRGDTSAWTDTPSDRALKAKMNYLEAYDAATALASNEEEKKQSNADADLVDKYN KAKRSKSLVQKHQEELVDQSSSSKKKTKQQKQKEKEKEEWAGQHPWKPWDRDKDLSAGRQNVKLDAENMGQGLTSRFSSANFQRNFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	2.2	0.8711
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	3.5	0.8589
AT1G16810			unknown protein		Lus10033383 [exp]	3.5	0.8596
AT5G11500			unknown protein		Lus10038625 [exp]	6.7	0.8544
AT5G08450			unknown protein		Lus10004299 [exp]	10.5	0.8156
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	10.8	0.8010
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	11.8	0.8313
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10017459 [exp]	14.0	0.8087
AT5G19900			PRLI-interacting factor, putat...		Lus10000189 [exp]	14.1	0.8370
AT5G14680			Adenine nucleotide alpha hydro...		Lus10014545 [exp]	18.7	0.8076

Compare expression of checked genes

Lus10017919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.