Plant FIBer expression Database

Lus10017920 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71970 69 / 2e-14 unknown protein
AT1G22680 62 / 6e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009418
[exp]
118 / 1e-32 AT1G71970 83 / 4e-19 unknown protein
Lus10028703
[exp]
109 / 6e-29 AT1G71970 83 / 4e-19 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G111700
[exp]
97 / 7e-25 AT1G71970 89 / 6e-22 unknown protein
Potri.019G082866
[exp]
96 / 2e-24 AT1G71970 86 / 2e-20 unknown protein
PFAM info
Representative CDS sequence
>Lus10017920 pacid=23145667 polypeptide=Lus10017920 locus=Lus10017920.g ID=Lus10017920.BGIv1.0 annot-version=v1.0
ATGGATCAATACACCTTCTACGACACTTCTTATTCTGCTGTCGCTAAATCTGCCCGTGCCCTTTCTTTTTCGTCGTCATCCTCATCCTCCGCCTCCTCCT
CTTTCTTCCCAGACGATTCTCCTTCCCTCCCTGAAACCCCTCTCCATTACGCCTCCGCCCGCGTCCCTTTCTGTTGGGAGAAATGTCCCGGCATTCCCAA
GCTATCCACTGGGTCACTAATTCTCACTGGCGACGACAAAAAACCTACCGAGCGGTCTCCAAACAATAGCGACGGTAAAACTATCTCCCCGTTAGTAAAG
GTGCTTCCACTGCCTCCGCCGGCTTCTTCATCAAGAAGGTTCAATTTCAACGAACCCCGGATAATTAGGAGAGCTCAAACGTTCTCTGGATCAACCCGGT
TAGCCCGGAAGGATCCATTTTTCGCGGCATTGATGGAATGCTCTAAAGACGGCGAGGATTATGATGATCGGGAGCTTCTGAGTGGTGGGCATAAGGTTTC
TAAGAGTATTGGGGACCGCATGGGCTTTGTCGGGATATATAGTTCTTGTAAACGGACATGTTCGGTGTCGGAGTCCATCGTCTACCTCCCCAGGTCGTCG
GGTCCCGCACGGCCGTCGTACGATCTCCTCAATCGCCGGCGGTGA
AA sequence
>Lus10017920 pacid=23145667 polypeptide=Lus10017920 locus=Lus10017920.g ID=Lus10017920.BGIv1.0 annot-version=v1.0
MDQYTFYDTSYSAVAKSARALSFSSSSSSSASSSFFPDDSPSLPETPLHYASARVPFCWEKCPGIPKLSTGSLILTGDDKKPTERSPNNSDGKTISPLVK
VLPLPPPASSSRRFNFNEPRIIRRAQTFSGSTRLARKDPFFAALMECSKDGEDYDDRELLSGGHKVSKSIGDRMGFVGIYSSCKRTCSVSESIVYLPRSS
GPARPSYDLLNRRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71970 unknown protein Lus10017920
[exp]
0 1
AT2G18570 UDP-Glycosyltransferase superf... Lus10024037
[exp]
2.0 0.8302
AT5G38790 unknown protein Lus10003044
[exp]
3.2 0.7960
AT2G48010 RKF3 receptor-like kinase in in flo... Lus10008186
[exp]
13.1 0.7379
AT5G65430 14-3-3KAPPA, GF... 14-3-3 PROTEIN G-BOX FACTOR14 ... Lus10025727
[exp]
15.4 0.7703
Lus10040471
[exp]
18.5 0.6944
AT3G50830 ATCOR413-PM2, C... cold-regulated 413-plasma memb... Lus10012034
[exp]
19.3 0.7738
AT2G22590 UDP-Glycosyltransferase superf... Lus10025711
[exp]
22.8 0.7605
AT5G65980 Auxin efflux carrier family pr... Lus10001303
[exp]
28.0 0.7654
AT5G20110 Dynein light chain type 1 fami... Lus10030069
[exp]
28.6 0.7671
AT1G04280 P-loop containing nucleoside t... Lus10022217
[exp]
28.9 0.6998

Lus10017920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.