Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71800 304 / 4e-97 CSTF64 cleavage stimulating factor 64 (.1) AT3G18030 202 / 2e-61 ATHAL3A HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) AT1G48605 202 / 2e-61 ATHAL3B HALOTOLERANCE DETERMINANT 3B, HALOTOLERANCE DETERMINANT 3, Flavoprotein (.1) AT1G60000 70 / 3e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G00830 69 / 3e-12 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G61030 67 / 8e-12 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT3G23830 62 / 3e-11 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G39260 61 / 3e-11 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT4G24770 65 / 4e-11 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G60900 66 / 5e-11 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014814 [exp] 780 / 0 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 451 / 9e-155 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10006055 [exp] 446 / 3e-152 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1) Lus10014795 [exp] 233 / 2e-73 AT3G18030 338 / 6e-120 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) Lus10034286 [exp] 233 / 3e-73 AT3G18030 339 / 4e-120 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) Lus10017852 [exp] 69 / 6e-13 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 69 / 1e-12 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10022551 [exp] 66 / 2e-12 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 64 / 5e-12 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061200 [exp] 374 / 5e-123 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.015G089600 [exp] 209 / 5e-64 AT3G18030 348 / 2e-123 HALOTOLERANCE DETERMINANT 3, ARABIDOPSIS THALIANA HAL3-LIKE PROTEIN A, HAL3-like protein A (.1) Potri.008G172100 [exp] 72 / 9e-14 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 68 / 2e-12 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G061600 [exp] 67 / 4e-12 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.005G125500 [exp] 69 / 5e-12 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.011G050400 [exp] 68 / 9e-12 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.002G178200 [exp] 68 / 9e-12 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.004G155300 [exp] 64 / 1e-11 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G319900 [exp] 63 / 1e-11 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02441 [flax] [poplar] Flavoprotein Flavoprotein CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017923 pacid=23145655 polypeptide=Lus10017923 locus=Lus10017923.g ID=Lus10017923.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCTTCTCAACACCGCTGCGTTTTTGTTGGGAACATACCGTATGATGTTACTGAAGAGCAGCTTATAGAAATCTGCAGAGAGGTCGGGCCGG TTGTGTCTTTCAGATTAGTTACTGACAGGGAAACTGGAAAGCCAAAGGGCTACGGGTTCTGTGAGTATAAAGATGAAGAGACTGCTCTAAGCGCTCGACG TAACCTCCAGGGCTATGAGATCAATGGACGGCAATTACGAGTAGATTTTGCTGAAAATGACAAAAATGCGGATAGAGGCAGAGAGCAGGTTGTTGTTCTG CCTCAACTTGTTAATGTATCAAATCCCAGGAGACATGGTGGTGCCCCTGGAATCAGTACAGACTCTGCACAGCATCAACCACTAGGTCTCCAGATAGCCA TGACTGCTGCCACTGTCATCAATGGTGCTCTAGGTGTTTCTCCGACAGCAATGCAGCCAAATCACTCACAGGGTCAGTCAGCCTTACCAAGCGATCCATT GACATTTCATTTGGCCAAACTGTCTAGGAGTCAATTGAATGAAATAATGTCTGAGCTAAAGGTAATGGCCACACGAAACAGGGAAGAAGCTCGACAGCTA TTAATTACGAGGCCTCAATTACCAAAAGCCCTCTTTCAGGCGCAGATAATGCTTGGAATGGTGTCCTCAGAAGTGCTGAAAATGCCAAATATAATAGCAG TTCCAAGCGAACCTGCAATACATTCGTTACAAGGTACTCAACAGCATCAGCAAGACCTTCAGATATTTACTGGGCCAGCTCATTCTCAGGGAACACAGCC GGGCTTGATGTCCCAAATACCAGGTGGTCGCTCATCAGTAGTATCTCATAATGCCTTAGGGCAAGACCAGTTTTCTGCATCCTCGCTGCATAATACGGAG CCTCAAAATAAGGCCCATGCTGTCAACCATGTTCCTCTGCAAGCTCCATTTCCCATAAATTCTGCAGTTCCGCCACTTCCTCATGTACACCCCATCATTA GGCCACTAAATCCGGTTGCAGATCATCCGTCATTCTCACACCAAAATATCCAACAACCAATTGTACATCACCCGGGACATGCTGGAAGTGGGAATCTTGG CCAGAAGTCTCGAATGGGTCTTCCTCCTTCGGTGTCAGATACATTAGTTGAGGATCCTAGGGAACTAAGTAACCGACCGACAAAGCTTCAAAAGTTGGAT GAAGGCAGGGGCGCATTTTCCTCACTTAGGGCGTGTAACAATAAGGGACCTGGTTCAAACCAAATGGTCCGAGCTGGTCCGGGATCTGCAATGCTAGTAC CGAAACTAGAAGAGATACAAGTGCCTCCTCAGAGCAAGATTGGGGATAGCGTGTTGCACATGGAACTCCGCAGATGGGCAGACGTTATGGTCATTGCCCC ACTACCAGCCAATACCCTTGGCAAGATTGCTGGGGGATTGTGCGATAACCTGCTGACTTGTGTTGTTAGGGCGTGGGACTATGAGAAGCCTCTGTTCATA GCACCAGCTATGAACACGTTCATGTGGAGGAACCCATTCACAGAAAGGCATCTGATATCAGTAGATGAAATTAGGATTACCATGATCCTACCTGCATCAA AGAAGCTGGCTTGTGGAGATTATGGTACCGGTGCAATGGCAGAACCGTCTGGGATAAATTCAACTGTAAGAAGAGGAATGAACAAGGCGAAGGGACAAAC AGTTAAAAATAGTGAGAGAGAATCCTCACAATCGCTTGTAACTCCCCATCTGATTTGA
AA sequence Show only first row Show all	>Lus10017923 pacid=23145655 polypeptide=Lus10017923 locus=Lus10017923.g ID=Lus10017923.BGIv1.0 annot-version=v1.0 MAASSQHRCVFVGNIPYDVTEEQLIEICREVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRGREQVVVL PQLVNVSNPRRHGGAPGISTDSAQHQPLGLQIAMTAATVINGALGVSPTAMQPNHSQGQSALPSDPLTFHLAKLSRSQLNEIMSELKVMATRNREEARQL LITRPQLPKALFQAQIMLGMVSSEVLKMPNIIAVPSEPAIHSLQGTQQHQQDLQIFTGPAHSQGTQPGLMSQIPGGRSSVVSHNALGQDQFSASSLHNTE PQNKAHAVNHVPLQAPFPINSAVPPLPHVHPIIRPLNPVADHPSFSHQNIQQPIVHHPGHAGSGNLGQKSRMGLPPSVSDTLVEDPRELSNRPTKLQKLD EGRGAFSSLRACNNKGPGSNQMVRAGPGSAMLVPKLEEIQVPPQSKIGDSVLHMELRRWADVMVIAPLPANTLGKIAGGLCDNLLTCVVRAWDYEKPLFI APAMNTFMWRNPFTERHLISVDEIRITMILPASKKLACGDYGTGAMAEPSGINSTVRRGMNKAKGQTVKNSERESSQSLVTPHLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	0	1
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	4.9	0.8480
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	5.7	0.8650
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022885 [exp]	6.3	0.8506
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10014622 [exp]	7.1	0.8247
AT5G43680			unknown protein		Lus10040152 [exp]	7.3	0.8452
AT5G61900		CPN1, BON1	COPINE 1, BONZAI 1, Calcium-de...		Lus10043206 [exp]	8.4	0.8403
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	8.7	0.8647
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	8.8	0.8583
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10006192 [exp]	12.0	0.8201
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	17.2	0.8245

Compare expression of checked genes

Lus10017923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.