Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71810 820 / 0 Protein kinase superfamily protein (.1) AT1G79600 397 / 2e-128 Protein kinase superfamily protein (.1) AT3G24190 363 / 3e-114 Protein kinase superfamily protein (.1) AT4G31390 314 / 5e-97 Protein kinase superfamily protein (.1.2) AT5G24970 314 / 4e-96 Protein kinase superfamily protein (.1.2) AT2G39190 242 / 3e-69 ATATH8 Protein kinase superfamily protein (.1.2) AT3G07700 209 / 4e-58 Protein kinase superfamily protein (.1.2.3) AT5G64940 207 / 8e-57 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 130 / 8e-32 Protein kinase superfamily protein (.1) AT4G24810 120 / 8e-29 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035701 [exp] 391 / 2e-125 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 322 / 1e-99 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032616 [exp] 310 / 6e-91 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 310 / 1e-90 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10020152 [exp] 286 / 4e-86 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037291 [exp] 260 / 1e-76 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1) Lus10036522 [exp] 237 / 4e-67 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026952 [exp] 230 / 2e-63 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 226 / 2e-63 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061000 [exp] 869 / 0 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.002G000100 [exp] 378 / 5e-121 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 357 / 6e-112 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 324 / 2e-100 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 311 / 6e-96 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 253 / 6e-73 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G168600 [exp] 212 / 8e-59 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 210 / 4e-58 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 209 / 1e-57 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.015G091000 [exp] 126 / 1e-30 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10017924 pacid=23145646 polypeptide=Lus10017924 locus=Lus10017924.g ID=Lus10017924.BGIv1.0 annot-version=v1.0 ATGCAATGTTTGCTCGCTTCCCAGTTCTGCCGTCCCGTCCCCTCAACTCCTCCTTCCAATCTCCCAACGCTCCGAAAATTTCTTCCTCCTCGAGCGGCCG TCGTTCGAGCTCTTGACCGCGGTGACTCGGACGGTTTTACAAAGAAGTCCGGGTATTTGTTCGAGTTCAGTACTAGCGAGGTGAACGCTTTAGTCGATTA CAATATCAAGAGGATTGCCACGATTTATAGCAAGAAGCCGTGGATCGTTGCTCGGAGGCTGTTTCAGATTGGCATCACATTTGGGAAGTGGTTTGGTGGT CGGTTTATTGATGGACTATCTGACAAGTCTGACCAAGTGTTCGAGATTAGAGCTGCTGAGCTTAGGAGGATACTTCAGGAACTTGGACCTGCTTACGTCA AAATTGCTCAGGCTGTTTCTTCTCGATCTCGTCTTTTAGCAACTTATGCCCAACATGTGTTTGACAATTCAAAAGAGAAGGAAATGAAACAAGATTTGAT ACCACCATCGTATCTTGATGAACTCTCGTTATTGCAAGATCGAATAGCTCCATTTTCCACGGAAATTGCCTTGAAGACAATAGAAGAGGAACTTGGATTA CCCATAGACTTGATATTTTCTGAAATATCACCAGAGCCTGTAGCTGCAGCTTCACTCGGGCAGGTCTATCAAGCAAGGCTTCGTAGTAGTGGCCAGCTTG TTGCTATTAAAGTGCAGAGGCCAGGAGTTCAGGCTGCCATTTCTCTGGACATCTTGATCCTCCGCTATATTGCAGGAATTATAAGGAGATTTGGGAAATT CAACTCTGATCTGCAGGCAGTTATTGATGAGTGGGCATCAAGTCTTTTTCGGGAGATGGACTATACGAATGAGGCAAGAAATGGACTCAAGTTTCGAGAG CTATATGGTGATATAAAAGATGTGATCGTTCCAGAAATGTTCACCGAGTACACAACTCGCAAAGTGCTTGTGATGGAATGGATTGAGGGACAAAAATTGG CTGAAGTTAAGGATATATACTTGGTTGAGGTGGGAGTTTACTGTTCATTCAGACAACTATTGGAATGTGGTTTTTATCATGCTGATCCACACCCTGGAAA CCTTCTTCGTACATATGATGGGAAGCTTGCGTATCTAGATTTTGGTATGATGGGAGACTTCAGACAAGAACTCCAGCTTGGATTTATTGAAGCTTGTCTT CATCTTGTTAATCGCGATTTTGATGCATTGTCTGAGGACTTTGTCACTCTAGGGTTTCTTCCAGCAACTGCAGACAGGGAGGCTGTTACAAGAGCCTTAA CAGGTGTCTTCAAGAATGCCATTGACAGAGGAGTTCGTAATATAAGTTTTGGAGATCTTTTAGGTGATTTGGGGACTACAATGTACAAGTTTAAGTTTCA GATACCTTCATATTTTTCACTTGTTATTCGGAGTCTTGCAGTTTTGGAGGGAATCGCTATCAGTTTTGACCCCAATTACAAAGTTTTGGGTAGTACCTAT CCATGGATTGCCAGAAAAGTACTAACTGACAGCTCTCCTCAGCTAAAGTCCTCCCTGAAATCTCTTCTCTACAAGGATGGTGTCTTCAGAATAGACCGAT TAGAGTCTCTACTTTCGGAGGGTTCCTTCATTAGGGAAATACTTCTTCAAGAAGTTGCAAAGGGTTTGGATGCACTTGGTCTTGCAACTATAGATTCTTT AACGTATAGCGCTACTGCTGGCATACCGTTTGCAATGTCCTTGTCTTCGTCCACAATGACTGAAGATGATAGAATGAATTTGATAGTCCTGCGTCGCCTT TTTTTCTTGTTGTCAGGAGGCCTCAAGAACGGAAGTACCAACACGGAGGATGTAGTTAGTTATCCTCCTGAAGCTGGTATAGTTGGGAAATATCATGACT TTAGAATCAACAAACAAAATGGAAAGTATAAGGAAGTTACAGCCATTACATCATCCAAGAATGAAACCGCATTAACACCTGTTGTTTTGTATGAGCTTCC GCAAGTTGAAGATATTATGCCAATCCTCTCAGTTATCACTGAGCTCCCTCCAGAAACCCAGCAGCAGTTGCTGTCCGTGCCAACTGATTTGGTTGGAAGG TTGATTTCTCGTGCAACTGCCCGGACCATCCAGAGGGTGTTCCTTTGA
AA sequence Show only first row Show all	>Lus10017924 pacid=23145646 polypeptide=Lus10017924 locus=Lus10017924.g ID=Lus10017924.BGIv1.0 annot-version=v1.0 MQCLLASQFCRPVPSTPPSNLPTLRKFLPPRAAVVRALDRGDSDGFTKKSGYLFEFSTSEVNALVDYNIKRIATIYSKKPWIVARRLFQIGITFGKWFGG RFIDGLSDKSDQVFEIRAAELRRILQELGPAYVKIAQAVSSRSRLLATYAQHVFDNSKEKEMKQDLIPPSYLDELSLLQDRIAPFSTEIALKTIEEELGL PIDLIFSEISPEPVAAASLGQVYQARLRSSGQLVAIKVQRPGVQAAISLDILILRYIAGIIRRFGKFNSDLQAVIDEWASSLFREMDYTNEARNGLKFRE LYGDIKDVIVPEMFTEYTTRKVLVMEWIEGQKLAEVKDIYLVEVGVYCSFRQLLECGFYHADPHPGNLLRTYDGKLAYLDFGMMGDFRQELQLGFIEACL HLVNRDFDALSEDFVTLGFLPATADREAVTRALTGVFKNAIDRGVRNISFGDLLGDLGTTMYKFKFQIPSYFSLVIRSLAVLEGIAISFDPNYKVLGSTY PWIARKVLTDSSPQLKSSLKSLLYKDGVFRIDRLESLLSEGSFIREILLQEVAKGLDALGLATIDSLTYSATAGIPFAMSLSSSTMTEDDRMNLIVLRRL FFLLSGGLKNGSTNTEDVVSYPPEAGIVGKYHDFRINKQNGKYKEVTAITSSKNETALTPVVLYELPQVEDIMPILSVITELPPETQQQLLSVPTDLVGR LISRATARTIQRVFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	0	1
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	1.7	0.9207
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	1.7	0.9324
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	2.0	0.9130
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	5.3	0.9273
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019083 [exp]	5.5	0.9104
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	6.7	0.8982
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	7.7	0.8873
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	8.9	0.9123
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	9.9	0.8875
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	10.2	0.8641

Compare expression of checked genes

Lus10017924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.