Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 243 / 2e-75 HXXXD-type acyl-transferase family protein (.1) AT3G30280 219 / 3e-66 HXXXD-type acyl-transferase family protein (.1) AT4G15390 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) AT1G24420 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) AT1G24430 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) AT5G47950 186 / 1e-53 HXXXD-type acyl-transferase family protein (.1) AT5G23970 173 / 4e-49 HXXXD-type acyl-transferase family protein (.1) AT5G47980 174 / 5e-49 HXXXD-type acyl-transferase family protein (.1) AT4G15400 169 / 1e-47 HXXXD-type acyl-transferase family protein (.1) AT5G48930 100 / 2e-22 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035932 [exp] 293 / 9e-95 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 213 / 1e-63 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 209 / 2e-62 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 195 / 4e-57 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 198 / 1e-56 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036078 [exp] 176 / 1e-49 AT3G26040 221 / 8e-67 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 172 / 7e-48 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10040354 [exp] 167 / 4e-46 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 164 / 1e-45 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010300 [exp] 307 / 3e-100 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 252 / 5e-79 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 251 / 1e-78 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Potri.006G010200 [exp] 249 / 2e-78 AT3G26040 247 / 9e-78 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 243 / 5e-76 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 242 / 5e-75 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 239 / 3e-74 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 238 / 2e-73 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 229 / 7e-70 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 226 / 6e-69 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10017925 pacid=23145659 polypeptide=Lus10017925 locus=Lus10017925.g ID=Lus10017925.BGIv1.0 annot-version=v1.0 ATGGCAACTTTGAGGATCGAAATGGTTTCCAAGGAGAGAATCAAACCAGCTTCTCCAACTCCAGACCACCTCAGAATCTACCAACTCACAATCTTCGACC AAACAAGCCCTAGCGTCTACGTCCCAGTCTGCCTTTTCTACCCTTCCTCATCCATAAAATTACACCAACGCCCTTCCGTTGCCGATAGCTTGAAAGCTTC CCTCTCAAACACCCTCACCGTTTACTACCCGCTGGCCGGGCGGTACAGCAAGGACCAGTACTCTTTCTCCCTCGAATGCAACGACCGCGGAGTTGACTTC CTCGTGGCCAACGTTGCTTGCGGCCACTTGTTGTCGGACGCGCTCCGCCAGCCCGACCAAGATCGCTTGCTGCCGTTGCTCCCTTGTCGCCCTCAGGGGA CAAACGTTGACTCCAACGGCGATTTAGTGCTTTTAGCAGTTCAGGTCAACTTCTTCGACTGTGGAGGAGTCGCCTTGGGCGTGTGCATATGGCATGGGAT AGCCGATGCCTGTACTCTCGGTTCCTTCATTCGAACTTGGGCTGGGATCAACTCCGGCGCCGGCGTTCAGAAAAACGTTGTCGTCCAGGACTGCACTTCT CTCTTCCCTCCGAGGGATCTGTCGAAGTACAAAGAAGCAGTGGCCAAATTCAAAGCGACGGTCACCACCGCGGACTCCGTAGTCAAGAGATTCGTGTTTG AAGCAGATAAGATAGAGATTCTAAGATCCAAAATCTTTAGTCAGCGGCCTTCACGCGTACTGGCTGTGTCGGCCGTAATTTGGGCGGCTGCGATTAACAT AGCTAGACACAAACGTCATCGTCGACGGGTAGCTGGTCATGATAACAACAATAATGAAAACACGGATTATCACATAGCTGCGATGACTACGAACCTACGG CCGAGATTGCACCCGGCGCTGCCGGAGACAGTGATGGGGAACATCATCCAAATCCCCGTGTTTGCCAAATGGGACCAACAAAACGAGGAAGAAGAAGAGG AAGAGGAGGAGGGAAAGTATTACCAAGCTTTGGCGGAGAAGCTGAGGGGTTCGGTGAGTACGGTGAGGGACGAGAGCGTGAAGAAGGTAGCTGGGTGCGA AAGGTCGATAATGGAAGTAGTGAAGTGTTTTGTGAAAGAGTACGCAGATGGGAATCTTGTGGCGATGAGCAGTTGGTGTAGGTTCCCGTTCTATGAGTTG GATTTCGGGTGGGGTAAGCCAGTCTGGGTTGGTTTCTTTAAAATGTGTTATAATCTGGGTGTGCTGATCGATGCTCCCGATGGACAAGGAATTGAAGCGT GGATGACTTTGAGTAAGGAGGACATGTCCATGTTTGAGAAGGATGCTGGTATTCTCCGATATGCATCTTTTCCCAAATATTATATTAATTAA
AA sequence Show only first row Show all	>Lus10017925 pacid=23145659 polypeptide=Lus10017925 locus=Lus10017925.g ID=Lus10017925.BGIv1.0 annot-version=v1.0 MATLRIEMVSKERIKPASPTPDHLRIYQLTIFDQTSPSVYVPVCLFYPSSSIKLHQRPSVADSLKASLSNTLTVYYPLAGRYSKDQYSFSLECNDRGVDF LVANVACGHLLSDALRQPDQDRLLPLLPCRPQGTNVDSNGDLVLLAVQVNFFDCGGVALGVCIWHGIADACTLGSFIRTWAGINSGAGVQKNVVVQDCTS LFPPRDLSKYKEAVAKFKATVTTADSVVKRFVFEADKIEILRSKIFSQRPSRVLAVSAVIWAAAINIARHKRHRRRVAGHDNNNNENTDYHIAAMTTNLR PRLHPALPETVMGNIIQIPVFAKWDQQNEEEEEEEEEGKYYQALAEKLRGSVSTVRDESVKKVAGCERSIMEVVKCFVKEYADGNLVAMSSWCRFPFYEL DFGWGKPVWVGFFKMCYNLGVLIDAPDGQGIEAWMTLSKEDMSMFEKDAGILRYASFPKYYIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017925 [exp]	0	1
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	2.0	0.8500
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	2.4	0.8760
					Lus10029057 [exp]	2.8	0.8824
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	6.9	0.8391
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	10.1	0.8678
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Lus10002195 [exp]	10.4	0.8147
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017847 [exp]	10.6	0.7733
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Lus10000463 [exp]	11.3	0.8068
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	12.7	0.7787
					Lus10024122 [exp]	14.1	0.8253

Compare expression of checked genes

Lus10017925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.