Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14920 629 / 0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) AT5G05480 356 / 1e-114 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025775 [exp] 607 / 0 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10025771 [exp] 452 / 5e-152 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10017437 [exp] 333 / 1e-105 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10035890 [exp] 275 / 2e-85 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Lus10007518 [exp] 197 / 2e-58 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G109700 [exp] 741 / 0 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.010G185100 [exp] 357 / 2e-115 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1) Potri.008G072400 [exp] 349 / 3e-112 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12222 [flax] [poplar] PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence Show only first row Show all	>Lus10017926 pacid=23145660 polypeptide=Lus10017926 locus=Lus10017926.g ID=Lus10017926.BGIv1.0 annot-version=v1.0 ATGCTGCTGCTACCTCCTTCTCGTTGCTGTTGCTTCACTCTAGTCTTCTTCTTCCTCATCTTCATCCATCAATCATTTCCCTCCACAGCTAACCTTCACA CGATCAACATCAATCCCCTCCTCAGATCCAGCCTCCGCAGCCCACCGCCGACAACTCTCTCCGACACAGACCACCTCACCAACCAATCTCCTCCGCCGAC TGTTTTCTTCGAAGTCACAAAGCCCATCTCTGTCCCCAAAACTCAACCCTGTAAACACCTCATCCTTCAACACGACTTCGGATTCACCTATTCCAAACCC CCAGTCATCTCCAACTACAGTTTCCCTTCTCACTGCCCCCACGATTTCTCCAAGGCCGTCCTTGAATGGAACGCCACTTGCAAGGGAAGGCAATTCGACC GCATCTTCGGCGTCTGGCTTGCTGGGGTTGAGCTTCTCCGTAGCTGCACGGCGGAGCCCAGACCTAACGGGATCTTCTGGACTGTCAAGAAGGACATCAC CAGGTACTCTTCTTTGCTGCTCAGTAACGATACCCAGGAATTTGCTGTTTTCCTCGGAAACATCGTTGACAGCACATACACTGGAATCTACCATGTCAAC GTGAGCATTTACTTCTATCCTGATCATGATGAATCTGGCGGTAATGTTGCAAGTGAGAGGAAGAAGGATCCGGCTGATTTGATCTTACCGATTTCGAGAG ACGGTCCGCTGAATGATGGATTGTGGTTCGAAATCCAGAACTCAACTCATACGGAATGGAAGGAGTTTATGATTCCATTGAATGTCCGTAGGGCTGTGTT GGAGGTTTATGTCTCGTTTCATGAGAATGATGAGTTCTGGTTCACCAATTTCCCTAATGACTACATTGTTGCCAATAATATCTCCAATGCCTTAGGAAAC GGACCCTTTAGGGAAGCGGTTGTGAGTCTTGATGATGATGGTGTTACCGTTGGTGCTGTCTGGCCTTTCACTGTGATCTACACTGGTGGAGCTAATCCTC TGCTGTGGAGGCCGATTTCGGCCATTGGATCGTTCGATCTCCCTACTTACGACATTGAGATTACTCCATTTCTAGGGAGTTTGCTCGACGGGAAGACCCA CAGGTTGGGTTTCAGTGTTACCAATGCGTTAAATGTCTGGTTCGTTGATGCTAATCTGCATCTGTGGTTGGATCATCAGAGTGCCAAGACAGAAGGGGTT CTTCTAAACCGTCATGATCAGCTTCATCTTTCTTCGCAGATTAGCTTCAAGGGTTTGAATGGCAAGTTTCTGACTGGTGCAAGCAGATCAGTCTCTTCCA AAGGATGGCTCAAGTCCTCGCTGGGGAACATCACCACCCATTTTAGCCAACATTTCAATTATAATAACGTGATGGAGCTGCACAAGGATGCCGATTTGCA GACTATTATGCAGGTGATTCTCACAAATGACAGTGTCTCGTTTGAGTCACCTTTTTCCCATGCCGAATCGTTCGGATCGCGCAGCAATTTCAGCCTAGAC TTCTACTCCGACTTCAAGGAGCAACCAAACAATGCTGGCTCTTACATCATAAACCTCACGCTGGGGTTCGACAGGAAGAAATCAGATAGTAGCCACCATG ACTCCTCTCGATCGTCTACCGCCTCGTCTCTCCAGAATCGGCAGAGCGCGCAAGGTGTGATGTTGGTGAAGAACAACTTAGTGGTGAGTGGAGTGGGAGC AACACAGCAGGTATACAAGTACGACAGCAGTAAGACCTGCTATTTCAGGAACATAAGCAGCTTCAACTACACCATCCTTTCCGACAAGGAGGTCAATACT TGCTCCAGAGAAAATAAGCTCCCTTATCTGGGATTGCAGGCCGCCAAGTTATGGCCTTTCCCGAGTCGGAGATCGTTATTCATGTCATCATCATCATCTG TATTGCCGGATAGGCATTGA
AA sequence Show only first row Show all	>Lus10017926 pacid=23145660 polypeptide=Lus10017926 locus=Lus10017926.g ID=Lus10017926.BGIv1.0 annot-version=v1.0 MLLLPPSRCCCFTLVFFFLIFIHQSFPSTANLHTININPLLRSSLRSPPPTTLSDTDHLTNQSPPPTVFFEVTKPISVPKTQPCKHLILQHDFGFTYSKP PVISNYSFPSHCPHDFSKAVLEWNATCKGRQFDRIFGVWLAGVELLRSCTAEPRPNGIFWTVKKDITRYSSLLLSNDTQEFAVFLGNIVDSTYTGIYHVN VSIYFYPDHDESGGNVASERKKDPADLILPISRDGPLNDGLWFEIQNSTHTEWKEFMIPLNVRRAVLEVYVSFHENDEFWFTNFPNDYIVANNISNALGN GPFREAVVSLDDDGVTVGAVWPFTVIYTGGANPLLWRPISAIGSFDLPTYDIEITPFLGSLLDGKTHRLGFSVTNALNVWFVDANLHLWLDHQSAKTEGV LLNRHDQLHLSSQISFKGLNGKFLTGASRSVSSKGWLKSSLGNITTHFSQHFNYNNVMELHKDADLQTIMQVILTNDSVSFESPFSHAESFGSRSNFSLD FYSDFKEQPNNAGSYIINLTLGFDRKKSDSSHHDSSRSSTASSLQNRQSAQGVMLVKNNLVVSGVGATQQVYKYDSSKTCYFRNISSFNYTILSDKEVNT CSRENKLPYLGLQAAKLWPFPSRRSLFMSSSSSVLPDRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	1.7	0.9246
AT4G23740			Leucine-rich repeat protein ki...		Lus10033936 [exp]	3.9	0.9046
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028951 [exp]	5.1	0.9140
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	5.9	0.9045
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	6.3	0.9051
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10022561 [exp]	8.2	0.8818
AT4G13840			HXXXD-type acyl-transferase fa...		Lus10016638 [exp]	9.0	0.8581
AT3G07080			EamA-like transporter family (...		Lus10011864 [exp]	9.6	0.8893
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10004642 [exp]	12.9	0.8562
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	13.3	0.9116

Compare expression of checked genes

Lus10017926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.