Plant FIBer expression Database

Lus10017927 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24990 674 / 0 Serine/threonine-protein kinase Rio1 (.1)
AT5G37350 674 / 0 Serine/threonine-protein kinase Rio1 (.1.2)
AT3G51270 53 / 3e-07 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002728
[exp]
904 / 0 AT2G24990 681 / 0.0 Serine/threonine-protein kinase Rio1 (.1)
Lus10032627
[exp]
669 / 0 AT2G24990 531 / 0.0 Serine/threonine-protein kinase Rio1 (.1)
Lus10017941
[exp]
55 / 1e-07 AT3G51270 580 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Lus10013682
[exp]
54 / 3e-07 AT3G51270 585 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G096100
[exp]
744 / 0 AT5G37350 701 / 0.0 Serine/threonine-protein kinase Rio1 (.1.2)
Potri.017G001100
[exp]
55 / 7e-08 AT3G51270 538 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF01163 RIO1 RIO1 family
Representative CDS sequence
>Lus10017927 pacid=23145647 polypeptide=Lus10017927 locus=Lus10017927.g ID=Lus10017927.BGIv1.0 annot-version=v1.0
ATGTCTGCGGAGGTTGAAAATTCTGTGCCGGTCGAACAGCTCGCTGGAGAAGAAGATGATGAAGATTTGTGGTCTTCCGACTCTGAAATCGGGGATGCAT
TGGATTGGTTAGATGCCAAAGACCACGGTGAAGCGGGCGAGGGGAGTTTCGCCCCCAATTCAAGGAGGCCGAACGCTCATGGAGGCCTCCACTCTCGGCC
TAGTTCTTCGTCCCTTCAACCTCTTGCCAATCGTAACCAGAAGTTCACCCACCACATCCGAGCTTCTCCACTAGAGGAGTGGGAAGGGAGGATGAACGTT
GGGATGTCTAATTCTGTGACTACTGCGATTCGTGGAAGTGTTCGGGACATTGCAATCGGGAAAACAAAAACTACTGAGAAAGCAGACCGCGCTACTGTTG
AGCAGGCCATTGATCCTAGGACCCGAATGGTTTTGTTCAAAATGCTTAATCGTGGGGTGTTTAATGATATTAATGGCTGCATCTCAACCGGAAAAGAGGC
AAATGTCTACCATGCAACTAAATCCAATGGTCAGGAGCTTGCAATCAAAGTGTACAAAACATCCGTTCTGGTCTTCAAGGACCGGGACAGATATGTACAA
GGTGACTATCGATTTAGATTTGGATACTGCAAACATAATCCCAGGAAAATGGTGAAGACATGGGCGGAGAAAGAATTGAGGAACCTAATAAGGATAAAAG
CTGCTGGAATTAGGTGTCCTACTCCTTATCTATTGAGGCTTCATGTCCTGGTGATGGAATTCATAGGGAAAGCTGGATGGGCAGCACCGCGTCTGAAGGA
TGCTGGCTTATCACTGGATAAGTTGCGGGAGGGTTATATGGAGATGATCATGTACATGCGTATATTGTATCAAACGTGCAAACTTGTACACGGCGACCTC
AGTGAGTACAACATACTTTATTTCGAGGGTCATCTGTATATAATTGATGTCTCTCAGTCAGTTGATCTAGACCATCCTCGGGCCCTTGATTTCTTGCGTG
AAGATTGTGTGCATGTTTCTGACTTCTTTAAGAAACATGGGGTGGCTGTGATGAATATTAGGGAGTTGTTTGACTTTATAGTGGATCCAAATATTAAGGA
TGACTCCATTGACAGCTACTTGGAAGAGGTTCAAAAAACAATAATGAGCAGAGATGTTACTGCAGAAGATGAAATTGCAGATTCTGTGTTTGTTCAGGCA
TACATTCCAAAAACACTAGGGAGCGTGAAGAATGCGGATGAGGAGGTTATACGGCTGACGAGTGGGGAGAACACTGAGAACATGTACTACAAGACAATCA
CAGGATTGAAGGGCGTTCTTTCTAAAGCCGCCAAACAGAAAAATGACGAGCTTAAGGAGGAGGAAGTGAAGCCTGGAGAAGAGTCGTTGGTGAACGAGCA
GGATGCCAGTTGCGGCTCTGATGAGGATAGTGGGTTGAGTGATTCAGATGATGATGGAAGCAGTTGTGTGTCGGAAACGGAGAAACCGAGTCAAGTTGAT
AGAAAAGCTGCGAGGAAAGAGAACAAGAAGAAGGTGAAAGAAGAGAAGAGGGAAGCTCGGAAGAGTAAAGTCCCCAAGGCTATAAAGAAACGGAAGAAGA
AAATGTCCAAAGCAAAGAAGACAAGGTAG
AA sequence
>Lus10017927 pacid=23145647 polypeptide=Lus10017927 locus=Lus10017927.g ID=Lus10017927.BGIv1.0 annot-version=v1.0
MSAEVENSVPVEQLAGEEDDEDLWSSDSEIGDALDWLDAKDHGEAGEGSFAPNSRRPNAHGGLHSRPSSSSLQPLANRNQKFTHHIRASPLEEWEGRMNV
GMSNSVTTAIRGSVRDIAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFNDINGCISTGKEANVYHATKSNGQELAIKVYKTSVLVFKDRDRYVQ
GDYRFRFGYCKHNPRKMVKTWAEKELRNLIRIKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAPRLKDAGLSLDKLREGYMEMIMYMRILYQTCKLVHGDL
SEYNILYFEGHLYIIDVSQSVDLDHPRALDFLREDCVHVSDFFKKHGVAVMNIRELFDFIVDPNIKDDSIDSYLEEVQKTIMSRDVTAEDEIADSVFVQA
YIPKTLGSVKNADEEVIRLTSGENTENMYYKTITGLKGVLSKAAKQKNDELKEEEVKPGEESLVNEQDASCGSDEDSGLSDSDDDGSSCVSETEKPSQVD
RKAARKENKKKVKEEKREARKSKVPKAIKKRKKKMSKAKKTR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G24990 Serine/threonine-protein kinas... Lus10017927
[exp]
0 1
AT5G18820 Cpn60alpha2, EM... embryo defective 3007, chapero... Lus10038352
[exp]
6.3 0.7765
AT5G17270 Protein prenylyltransferase su... Lus10030019
[exp]
20.3 0.7602
AT1G71420 Tetratricopeptide repeat (TPR)... Lus10006073
[exp]
22.0 0.7134
AT5G18820 Cpn60alpha2, EM... embryo defective 3007, chapero... Lus10036216
[exp]
33.9 0.7168
AT1G79050 recA DNA recombination family ... Lus10026204
[exp]
35.2 0.7197
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Lus10012051
[exp]
43.7 0.6765
AT3G04160 unknown protein Lus10021983
[exp]
50.1 0.7104
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Lus10001388
[exp]
82.6 0.6752
AT4G13070 RNA-binding CRS1 / YhbY (CRM) ... Lus10040896
[exp]
85.8 0.5944
AT5G26760 unknown protein Lus10022386
[exp]
99.0 0.6690

Lus10017927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.