Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63310 275 / 6e-94 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT4G09320 169 / 4e-53 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT4G11010 170 / 1e-52 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23900 166 / 3e-51 Nucleoside diphosphate kinase family protein (.1) AT4G23895 165 / 3e-48 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT1G17410 87 / 3e-21 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014787 [exp] 379 / 6e-135 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10032392 [exp] 172 / 4e-54 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10024286 [exp] 166 / 4e-52 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10001824 [exp] 166 / 4e-51 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10003878 [exp] 166 / 7e-51 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10003844 [exp] 160 / 7e-50 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10023076 [exp] 94 / 1e-22 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093800 [exp] 292 / 1e-100 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.014G049900 [exp] 172 / 7e-55 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.002G138800 [exp] 169 / 1e-53 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.001G091001 [exp] 171 / 4e-53 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 168 / 6e-52 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 83 / 1e-19 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [flax] [poplar] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10017931 pacid=23145658 polypeptide=Lus10017931 locus=Lus10017931.g ID=Lus10017931.BGIv1.0 annot-version=v1.0 ATGGAAGCCGTAGGAGTAATTGGATGTAGCAGCAGCAGATTATCCGTCTCCTCGTCCCTTGGCCGCTCTCCGGCCGGCGTCAACTCTTTCCGATGTCAGA AGCCCAACCTTGGAAGAGTGGCAGCATTCTATTCGTCCTCCAATCTTTTCACATCTTCTCCATCATCCCTTACTATCAAAACAGTTAAGCCACTCCTTCG TAAGTCGACCAACAAATCTCGCGTCTTCCTTCCTCACTTGGTCGCTTCATTGGAAAAAGTTGAGGAGACATACATAATGGTCAAGCCCGATGGCGTTCAG CGAGGACTTGTAGGAGAAATCATATCAAGGTTTGAGAAGAAAGGGTTCAAACTCGCCGCCTTGAAGCTCTTCCAATGCCCTAAACAACTCGCAGAGGAGC ACTATAAGGATCTCAAGTCCAAGTCGTTCTACCCTAAACTCATCGACTATATCACTTCTGGTCCAGTTGTGTGCATGGCTTGGGAAGGTGTAGGGGTTGT GGCATCTGCTCGTAAGCTAATTGGGTCGACAGATCCGCTTCAAGCTGAACCTGGCACAATTAGAGGGGACCTTGCTGTTCAGACAGGGAGGAATGTCATT CATGGCAGTGACAGCCCTGACAATGGGAAGCGTGAAGTTGGTCTGTGGTTTAAAGAAGATGAAATATGTCAGTGGACACCAGCCCAAGCAGCTTGGTTAA GAGAGTGA
AA sequence Show only first row Show all	>Lus10017931 pacid=23145658 polypeptide=Lus10017931 locus=Lus10017931.g ID=Lus10017931.BGIv1.0 annot-version=v1.0 MEAVGVIGCSSSRLSVSSSLGRSPAGVNSFRCQKPNLGRVAAFYSSSNLFTSSPSSLTIKTVKPLLRKSTNKSRVFLPHLVASLEKVEETYIMVKPDGVQ RGLVGEIISRFEKKGFKLAALKLFQCPKQLAEEHYKDLKSKSFYPKLIDYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVI HGSDSPDNGKREVGLWFKEDEICQWTPAQAAWLRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	0	1
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	1.0	0.9203
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	1.4	0.9129
AT3G60520			unknown protein		Lus10042880 [exp]	2.2	0.8407
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	2.4	0.8598
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	3.3	0.8133
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	4.0	0.8587
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	4.2	0.8202
					Lus10032893 [exp]	5.5	0.8043
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10009860 [exp]	5.7	0.8264
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	6.9	0.7351

Compare expression of checked genes

Lus10017931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.