Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24820 630 / 0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) AT3G61140 77 / 2e-15 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014789 [exp] 717 / 0 AT4G24820 691 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10027348 [exp] 694 / 0 AT4G24820 698 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Lus10014916 [exp] 638 / 0 AT4G24820 619 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G090900 [exp] 679 / 0 AT4G24820 671 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2) Potri.012G093500 [exp] 675 / 0 AT4G24820 680 / 0.0 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1), 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10602 [flax] [poplar] RPN7 26S proteasome subunit RPN7 CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10017932 pacid=23145642 polypeptide=Lus10017932 locus=Lus10017932.g ID=Lus10017932.BGIv1.0 annot-version=v1.0 ATGGACTTCCCGGAGGGAACTCAACAACCGCATCTGGTGCTTGCTCACAAGCTCTTCCTCCTCACCCATCCCGATGTCCAAGACATCGAGAAAGTCCGCC TCAAGGACGAGGTCTTGGATTCCATAAAATCCTATGATATGGCCCCGTTGTTTGAAACCCTAGTGGCTGAATCGTTGCTTGAGAAGGATCAGACCCTCTT GGATCAGATGCGGGCAAAGATTGAGGAGGAGCTGAAGAAGCTCGACGAAAAGATTGCAGATGCTGAAGAAAACTTGGGCGAAAGTGAAGTTAGAGAAGCT CATTTGGCTAAATCCTTGTTCTATATTGGTATTGGCGACAAGGAGAAAGCTTTAGAACAACTCAAAGTGACAGAAGGCAAAACTGTTGCAGTTGGACAAA AGATGGATTTGGTATTCTATACCTTGCAACTTGCTTTCTTCTACATGGATTTTGATCTCATTTCTAAAAGCATTGACAAGGCAAAGAACTTGTTTGAAGA AGGAGGTGACTGGGAGAGGAAAAATCGTCTGAAGATGTCTCCTCGCAATTTCAAGAAGGCAGCTGATTTTTTTCTGGATTCTATCTCAACCTTCACTACA TATGAGATTTTCCCCTACGACACTTTCATATTTTACACTGTTGTGACTAGCATCATATCTTTAGATAGAGTGTCTCTGAAGCAGAAGGTGGTGGATGCAC CTGAAATCCTGGCGGTTATAGGGAAGATCCCACATCTTTCAGAGTTTTTGAACTCGCTGTATGATTGTCAATACAAGTCTTTTTTCACAGCATTTGCTGG GTTGACTGAGCAGATAAAGCTAGACCGATATCTGCACCCTCATTTCCGGTATTACATGAGGGAGGTGAGGACAGTGGTCTATTCTCAGTTCCTGGAGTCC TATAAGAGCGTGACGATTGAAGCTATGGCAAAGGCTTTCGGGGTGACAGTGGAGTTCATTGATTTGGAACTGTCACGCTTTATTGCAGCAGGGAAACTTC ACTGCAAGATTGATAAGGTAGCAGGCGTCCTGGAAACGAATCGGCCGGATGCGAAGAACGCACTGTACCAGGCAACCATCAAACAAGGAGACTTTTTACT GAACCGGATCCAGAAGTTGTCCCGAGTGATTGATTTGTAA
AA sequence Show only first row Show all	>Lus10017932 pacid=23145642 polypeptide=Lus10017932 locus=Lus10017932.g ID=Lus10017932.BGIv1.0 annot-version=v1.0 MDFPEGTQQPHLVLAHKLFLLTHPDVQDIEKVRLKDEVLDSIKSYDMAPLFETLVAESLLEKDQTLLDQMRAKIEEELKKLDEKIADAEENLGESEVREA HLAKSLFYIGIGDKEKALEQLKVTEGKTVAVGQKMDLVFYTLQLAFFYMDFDLISKSIDKAKNLFEEGGDWERKNRLKMSPRNFKKAADFFLDSISTFTT YEIFPYDTFIFYTVVTSIISLDRVSLKQKVVDAPEILAVIGKIPHLSEFLNSLYDCQYKSFFTAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLES YKSVTIEAMAKAFGVTVEFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24820			26S proteasome, regulatory sub...		Lus10017932 [exp]	0	1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	2.0	0.8978
AT4G11790			Pleckstrin homology (PH) domai...		Lus10006338 [exp]	2.8	0.8658
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	3.9	0.8514
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	4.9	0.8072
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10032594 [exp]	5.4	0.8033
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10037610 [exp]	12.6	0.8024
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	13.9	0.8477
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	16.4	0.8557
AT5G65880			unknown protein		Lus10011719 [exp]	20.1	0.8377
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	24.8	0.8479

Compare expression of checked genes

Lus10017932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.