Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 619 / 0 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 454 / 5e-159 Tyrosine transaminase family protein (.1) AT2G20610 442 / 9e-154 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT4G28410 417 / 7e-144 Tyrosine transaminase family protein (.1) AT4G28420 403 / 2e-138 Tyrosine transaminase family protein (.1.2) AT2G24850 378 / 1e-128 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 348 / 2e-117 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 347 / 5e-117 Tyrosine transaminase family protein (.1) AT1G77670 112 / 3e-27 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G23310 94 / 8e-21 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013676 [exp] 798 / 0 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10018626 [exp] 531 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 526 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017705 [exp] 526 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017704 [exp] 515 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 504 / 2e-178 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10033659 [exp] 499 / 2e-176 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 492 / 1e-173 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10032654 [exp] 424 / 8e-148 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014200 [exp] 553 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014100 [exp] 526 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 521 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 520 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 520 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 506 / 1e-179 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 483 / 2e-170 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 246 / 6e-81 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.002G086000 [exp] 112 / 5e-27 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G175400 [exp] 112 / 6e-27 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10017934 pacid=23147984 polypeptide=Lus10017934 locus=Lus10017934.g ID=Lus10017934.BGIv1.0 annot-version=v1.0 ATGGAGACTCCGGCGAACATCACCATTAAAGGGATACTGAGCTTGCTGTTGCAGAACGTTGATGATGATGATAATAAGAAGAGCTTGATTTCTCTTGGAA TGGGGGACCCTACTGCTTACTCTTGCTTCCAGACTCCTCCTGTTGCTTCTCAAGCTGTCATGGAGGCTCTCAGCTCTCACAAGTTCAATGGCTATTCCCC TACCGTTGGACTCCCCCAAACTCGAAGGGCGATCGCGCAGTACCTTTCGATCGAGCTCCCATATAATCTGTCATCGGACGATGTCTTTGTGACCTCCGGA TGCACACAAGCTATCGATGTAGCACTGGCATTGCTTGCTTACCCTGGTTCAAACATACTCCTGCCAAGACCAGGATTCCCGATTTACGAACTATGCGCTG CTTTTAGGGGGATCAAAGTCCGGCACTTTGATCTTCTCCCGCAGGATGGATGGAAGGTTGATCTTGCTGGAGTTGAATCCCTTGCTGATCACAACACTGT TGCAATTGTGGTCATCAACCCGGGAAACCCTTGTGGCAATGTCTACTCTTATCAGCATTTGAAGGAGATTGCTGAAACTGCTGAAAGGCTTAAGCTCCTC ATCATTGCTGATGAGGTGTATGGACATCTCGCTTTCGGACGTAACCCTTTTGTCCCCATGGGAGTTTTCGGGTCCACTGTGCCTGTTCTTACTCTTGGTT CTCTTTCGAAGCGATGGATTGTGCCAGGATGGCGTCTTGGTTGGTTCGTCACCTCTGATCCCTCCGGCACTTTTAGGAAACCAAAGACGGTCGAGCGTAT CAAGAAGTATTTCGACATATTGGGAGGACCTTCCACATTCATCCAAGCAGCAGTACCTCGAATTCTCGATCAAACCGATGAGGTTTTCTTCAACGGAACA ATCAAATTGTTGAAGCAGACTTCAGATATTTGCTTTGACCGAGTCAAGGAGATCCCTTGCATCACTTGCCCTCACAAGCCAGAAGGAGCCATGGCTGTAA TGATGAAATTGAATCTGTCAATGTTGGAAGACATCAGCGACGACATTGATTTCTGCTTCAAACTCGCCAAAGAGGAATCTGTTATTATTCTACCAGGAAC TGCGGTTGGACTACCGAACTGGCTTCGAATCACTTTTGCAGCCGATCCGGCATCACTGGAACAGGGCTTGGCGAGGCTAAAGTCATTCTGTGAGAGGCAC ACAAACGTCCTGCAAGGAAGTTAG
AA sequence Show only first row Show all	>Lus10017934 pacid=23147984 polypeptide=Lus10017934 locus=Lus10017934.g ID=Lus10017934.BGIv1.0 annot-version=v1.0 METPANITIKGILSLLLQNVDDDDNKKSLISLGMGDPTAYSCFQTPPVASQAVMEALSSHKFNGYSPTVGLPQTRRAIAQYLSIELPYNLSSDDVFVTSG CTQAIDVALALLAYPGSNILLPRPGFPIYELCAAFRGIKVRHFDLLPQDGWKVDLAGVESLADHNTVAIVVINPGNPCGNVYSYQHLKEIAETAERLKLL IIADEVYGHLAFGRNPFVPMGVFGSTVPVLTLGSLSKRWIVPGWRLGWFVTSDPSGTFRKPKTVERIKKYFDILGGPSTFIQAAVPRILDQTDEVFFNGT IKLLKQTSDICFDRVKEIPCITCPHKPEGAMAVMMKLNLSMLEDISDDIDFCFKLAKEESVIILPGTAVGLPNWLRITFAADPASLEQGLARLKSFCERH TNVLQGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	0	1
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	2.4	0.9724
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	5.8	0.9446
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10041711 [exp]	9.5	0.9492
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	10.0	0.9589
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	10.5	0.9602
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	10.5	0.9615
AT1G04910			O-fucosyltransferase family pr...		Lus10030093 [exp]	13.2	0.8924
AT4G32480			Protein of unknown function (D...		Lus10015437 [exp]	13.4	0.9559
					Lus10031880 [exp]	14.3	0.9231
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	14.8	0.9419

Compare expression of checked genes

Lus10017934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.