Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039453 [exp] 56 / 5e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017936 pacid=23147997 polypeptide=Lus10017936 locus=Lus10017936.g ID=Lus10017936.BGIv1.0 annot-version=v1.0 ATGCAATCAGGCACTGATGTTGTGGCGCAAATAACTGATGGAACAGTTGCTGTCACGCAAGGAAGACAAAATTTGCCGCTCCAAAATAGAGTTTTTGTTG TCAACAGTCGTCGTCGTAATTTTCTTGTTTCAATCTCCCTCATATGCCATCCATCGCCACCATCATCAAGCTCCTCTGTGGCCCATCGTGCGAGTTCCAA TTCTTCGATAATCTCGCTAGCTCTTAGCGCAACAACGGAGGAGGGCTCAGGGACAATCCCGAGTCCTCACTTCGCCCCCACTCGGACGGACGCCGCCAGG GTCGCCAGAACCGCTAGGCTTCCCGCCGCGGTCTCCAACACCGCCACCCACATTGATGTCGCCGATAGAGACAAGACGACAGCCACTACGGCCTTCGGGT TTTTCAAAACTGGGAACAATGGTGAGGCCTCCGAAGCCTTCTACAGGGGAATCAAAGAGGAGGAATTTAAGGATGGGGAGTGCCAAGTCCCGTATCGTCC TGATCGCCCACCAACGGGGTTAGAACCACTCAACTAA
AA sequence Show only first row Show all	>Lus10017936 pacid=23147997 polypeptide=Lus10017936 locus=Lus10017936.g ID=Lus10017936.BGIv1.0 annot-version=v1.0 MQSGTDVVAQITDGTVAVTQGRQNLPLQNRVFVVNSRRRNFLVSISLICHPSPPSSSSSVAHRASSNSSIISLALSATTEEGSGTIPSPHFAPTRTDAAR VARTARLPAAVSNTATHIDVADRDKTTATTAFGFFKTGNNGEASEAFYRGIKEEEFKDGECQVPYRPDRPPTGLEPLN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017936 [exp]	0	1
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	1.0	0.8811
AT2G32235			unknown protein		Lus10008093 [exp]	1.4	0.8748
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10026569 [exp]	4.5	0.8255
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	5.0	0.8155
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	6.3	0.7921
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	8.5	0.7848
AT3G50610			unknown protein		Lus10009346 [exp]	9.0	0.8322
					Lus10011712 [exp]	9.2	0.7531
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	9.4	0.7975
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	9.9	0.7962

Compare expression of checked genes

Lus10017936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.