Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013678 [exp] 377 / 1e-131 AT3G15115 50 / 9e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G372800 [exp] 63 / 7e-11 AT3G15115 114 / 5e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017937 pacid=23147895 polypeptide=Lus10017937 locus=Lus10017937.g ID=Lus10017937.BGIv1.0 annot-version=v1.0 ATGGGGTCAATCGCCGATGAAGGCAAAGTCAGCAGGCGAGAAGGGAAGAAAAACAGGGGAGCCCCTGTTCCTGACTTGCTGGAAGAAGCCTGGTCCTCCA GAAAATTCATCGACGGACCCACCACCACCACCTCAGCCTCCGCCGCCGTCGCCAACGCTGCCAACAGCAAGCCAGCTGTAAGATCCATGGGCAGATGCTT CTCCGATCCCACTTCTTCCCAAAGCGTTTCCCTCCCTCCTCAGCCGCCGCCGCCGCCTCAATCCGGTGGGTTGGCGAGGGCGCCGTCGCTGCCGCCGTGT GTAGGGCGGAGGTCCGGCGAACTTCCCGACGTCGGAGGAGGTTGCTGTCGGAAGTCTGCCGGCAGGAGTAAAGTTGGGGAAAGAGATGAAATGATGATGA TGATGAGGAGGGGGAAGAGAGGGAGCAGATCGGAGAAGGGTCGGAATCCGGGGAGCTTGGAGAGAGCGCCGTCGCTGCCACCGTGGATTGGCCGGAGTGA GGAGGAGGAGTTGGTGGAAGATGATGATGAGATTGATATGAGTATGAGCAGGCTGATTCAGCAGGCTATGTCTTGTTCTCTTGATGATATCTCCATTCCC AAACCCACCACAAGCTCCGCTAATTCTAAGGTAAACAACATCAAGATAAAGCATTCATCGAGCATGAAGAAGGAGACTAGAGATGGAAGTAATAGCAGAA GAAGAATAATGCCGGTGGCAAACGACGCCGTGGTAACAAACAACAGTCAAACTGGAGTCGGTGATGTTCATCAGGGAAGGAAACTAAAGAAAACAATGAG CAACCTTGAGATCCCTCGACAGAGGCCCAACAACAACAACGATAGATGCAGCCCGCCGATTCCGACGTGGGCCGCGGACTCGAATGCCCACTTGAGTGAA GATATCAAGGCCCATCTCAAGGTATGGGCCAGGTCAGTGGCTGCTAACATGCATTGA
AA sequence Show only first row Show all	>Lus10017937 pacid=23147895 polypeptide=Lus10017937 locus=Lus10017937.g ID=Lus10017937.BGIv1.0 annot-version=v1.0 MGSIADEGKVSRREGKKNRGAPVPDLLEEAWSSRKFIDGPTTTTSASAAVANAANSKPAVRSMGRCFSDPTSSQSVSLPPQPPPPPQSGGLARAPSLPPC VGRRSGELPDVGGGCCRKSAGRSKVGERDEMMMMMRRGKRGSRSEKGRNPGSLERAPSLPPWIGRSEEEELVEDDDEIDMSMSRLIQQAMSCSLDDISIP KPTTSSANSKVNNIKIKHSSSMKKETRDGSNSRRRIMPVANDAVVTNNSQTGVGDVHQGRKLKKTMSNLEIPRQRPNNNNDRCSPPIPTWAADSNAHLSE DIKAHLKVWARSVAANMH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017937 [exp]	0	1
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	3.9	0.9138
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	6.3	0.8890
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	9.2	0.8807
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	9.4	0.8963
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	9.5	0.8858
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	9.8	0.8936
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	10.2	0.8936
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	11.4	0.8569
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	12.4	0.8561
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10018721 [exp]	13.1	0.8240

Compare expression of checked genes

Lus10017937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.