Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15020 513 / 0 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT1G53240 512 / 0 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT2G22780 408 / 6e-143 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 382 / 9e-133 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G47520 372 / 3e-128 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT3G53910 61 / 2e-11 malate dehydrogenase-related (.1) AT5G43330 48 / 6e-06 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT1G04410 46 / 2e-05 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT4G17260 46 / 2e-05 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038323 [exp] 556 / 0 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10013680 [exp] 521 / 0 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10039642 [exp] 402 / 2e-140 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 389 / 3e-135 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10034458 [exp] 380 / 7e-131 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 378 / 4e-130 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10011587 [exp] 381 / 8e-130 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10000275 [exp] 370 / 4e-127 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10021666 [exp] 370 / 5e-127 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096300 [exp] 531 / 0 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 530 / 0 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 510 / 0 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.009G081600 [exp] 407 / 2e-142 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 406 / 4e-142 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 400 / 6e-140 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G102000 [exp] 380 / 4e-131 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 377 / 7e-130 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 373 / 3e-128 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 272 / 1e-90 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10017939 pacid=23147871 polypeptide=Lus10017939 locus=Lus10017939.g ID=Lus10017939.BGIv1.0 annot-version=v1.0 ATGAACTCAATGCTCAGATCCGCCAAAACCCTAACGGAAGCTGCCTCCCGATCTTCCCTTCTGCGCCGTGGCTACTCCTCCGAGTCTGTCCCTACCCGCA AGGTCGCCATCCTCGGCGCCGCTGGAGGGATCGGCCAGCCGCTCTCCCTGCTCATGAAGCTCAACCCTCTCGTATCCAACCTTGCCCTCTACGATATCGC CAATACCCCCGGTGTCGCCGCCGATGTTAGCCACATCAATACCAGATCTGAGGTGTCTGGATACGCTGGCGATGAACAGCTTGGAAAAGCGTTGGAAGGA TCGGATGTTGTGATAATACCAGCTGGAGTTCCAAGGAAGCCTGGAATGACTCGTGATGATCTCTTTAACATTAATGCTGGAATTGTTAAGGGTCTTTGTG AAGCCATTGCCAAGTACTGCCCAAATGCGCTTGTGAATATGATTAGCAATCCCGTGAACTCAACAGTTCCAATTGCTGCTGAGGTCTTCAAGAAAGCTGG AACTTATGATGAGAAAAGGTTGTTCGGAGTTACTACTCTTGATGTGGTTAGGGCCAGAACTTTCTATGCTGGGAAGGCCGGCGTCCCTGTTGCAGGAGTT AACGTTCCAGTTGTTGGTGGACATGCTGGTGTCACCATTCTCCCTTTGTTCTCACAGGCCAGTCCTTCAGCCAACCTGTCAGATGAGGAGATCGTCGCTC TTACAAAGAGGACTCAAGACGGTGGCACGGAAGTTGTGGAAGCTAAGGCTGGAAAGGGTTCTGCTACACTTTCAATGGCCTATGCCGGTGCCCTTTTCGC TGATGCATGCTTGAAAGGGCTCAATGGTGTTTCAGATGTGGTCGAGTGTACATATGTGCAATCAAATGTCACCGATCTTCCTTTCTTTGCTTCAAAGGTG AGGCTTGGGAAGAATGGTGTGGAGGAGATCTTCGGATTGGGCGCTCTTTCCGACTTCGAGAAAGAAGGGTTGGAAAAGATGAAGTCAGAGCTGAAATCCT CCATTGAGAAGGGAATTGCCTTTGCCAACAAGTGA
AA sequence Show only first row Show all	>Lus10017939 pacid=23147871 polypeptide=Lus10017939 locus=Lus10017939.g ID=Lus10017939.BGIv1.0 annot-version=v1.0 MNSMLRSAKTLTEAASRSSLLRRGYSSESVPTRKVAILGAAGGIGQPLSLLMKLNPLVSNLALYDIANTPGVAADVSHINTRSEVSGYAGDEQLGKALEG SDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCEAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRARTFYAGKAGVPVAGV NVPVVGGHAGVTILPLFSQASPSANLSDEEIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVSDVVECTYVQSNVTDLPFFASKV RLGKNGVEEIFGLGALSDFEKEGLEKMKSELKSSIEKGIAFANK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	0	1
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	1.0	0.9644
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	1.4	0.9594
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	1.7	0.9518
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	3.2	0.9444
					Lus10007580 [exp]	3.3	0.9325
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	5.3	0.9256
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	6.0	0.9077
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	6.3	0.9397
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	6.7	0.9371
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	7.3	0.9413

Compare expression of checked genes

Lus10017939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.