Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51270 551 / 0 protein serine/threonine kinases;ATP binding;catalytics (.1.2) AT2G24990 63 / 2e-10 Serine/threonine-protein kinase Rio1 (.1) AT5G37350 63 / 2e-10 Serine/threonine-protein kinase Rio1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013682 [exp] 721 / 0 AT3G51270 585 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2) Lus10002728 [exp] 55 / 1e-07 AT2G24990 681 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10017927 [exp] 54 / 2e-07 AT2G24990 677 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10032627 [exp] 50 / 4e-06 AT2G24990 531 / 0.0 Serine/threonine-protein kinase Rio1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001100 [exp] 578 / 0 AT3G51270 538 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2) Potri.015G096100 [exp] 59 / 6e-09 AT5G37350 701 / 0.0 Serine/threonine-protein kinase Rio1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09202 [flax] [poplar] Rio2_N Rio2, N-terminal CL0016 [flax] [poplar] PKinase PF01163 [flax] [poplar] RIO1 RIO1 family
Representative CDS sequence Show only first row Show all	>Lus10017941 pacid=23147858 polypeptide=Lus10017941 locus=Lus10017941.g ID=Lus10017941.BGIv1.0 annot-version=v1.0 ATGAAATTGGATGTGGAAGTCTTGAGATACCTCTCAAAAGATGATTTCAGAGTTCTTACTGCTGTTGAGATGGGTCAGCGGAATCATGAGATTGTTCCTG CTGAACTGATTGCCCGAATAGCTTCTCTTAAGCATGGGGGCACGTATAAAGTCTTAAAGAATTTGCTGAAGCATAAACTAGTGCACCATGACTCCTCTAA ATATGATGGCTTCCGGCTTACCTACCTCGGATACGATTTCCTTGCAATTAGAACTCTGGTCAATAGAGGAGTCATTGCGTCTGTTGGTCGTCAAATTGGA GTAGGGAAAGAGTCCGATATATTTGAAGTGGCTACAGAGGATGGTACAGTTTTGGCTATGAAGTTGCACAGACTTGGTAGAACTTCTTTCAGGGCTGTGA AATCCAAGCGTGATTACCTGAGACATCGAAGTAGTTTTAGCTGGCTGTATCTGTCTCGACTTGCGGCACTCAAAGAATTCGCCTTTATGAAGGCTCTGGA AGATCATGGTTTTCCTGTTCCAACAGCTGTGGACTGCAATAGACACTGCGTGATCATGTCCCTTGTTCAAGGATATCCGCTTGTGCAGGTGAAGCAAGTG CAGAATCCAGAAGTTATTTTTGAAACAGTTCTTGGACTTATTGTTCGCCTTGCAGAACATGGCCTCATACATTGCGATTTCAATGAATTTAATATTATGA TTGATGATGATGAAAAGGTGACCATGATTGATTTTCCCCAGATGGTATCTGTGTCTCATCGCAACGCACAAATGTTTTTCGACCGTGATGTTGAATGCAT CTATAAATTCTTTAGCAAGAGGTACAACCTCTCCTTCCAGGACGATCTGGAAATTAACAATTCTGCAGGGGTAGACATGGATGAAGCTAGCAGGCCTGTG TTTTCCTCAATTTCTATATCTGAGGGTGCTCTAGATAAGGAACTTGCAGCTAGTGGATTCACACGGAAGAATCAAGATGAGATAGAGAAGTTAACTGAAG CGGGGATTGAAGCAGACTCAAGTACTGACAGCGAGGAAGGTGAAGACGAAGAGCATATTTTAGAGCCGAATGAAACAAGCATCGCAAAATTGGATTCTCT GCAGTTAGAGGAGCAGGGAGATGAAAAGAGCTCCGAGGAAGACAAAGAAAAAGCTGAGACTCAAAAGAAGAGCGAAACGACAGAAAGCAATGGCCTTGCA TCGGAAGACGATAGTGAGGAGGAGGACGAAGATAAGCAGAAGGATGATGAAGAGTTGGCAAAGAGACTGGACAAGCATAAGAAAAAAGCAATAGCAGCAG CCAGAGGGAGGAAGAGTAGAATCTCGGCTCGGAATCTTTACAAAGACAAGGGTGGTAGATCTTCTCAGAGCTCCAAAGTTCATAAAATGACTGGCTGGTG A
AA sequence Show only first row Show all	>Lus10017941 pacid=23147858 polypeptide=Lus10017941 locus=Lus10017941.g ID=Lus10017941.BGIv1.0 annot-version=v1.0 MKLDVEVLRYLSKDDFRVLTAVEMGQRNHEIVPAELIARIASLKHGGTYKVLKNLLKHKLVHHDSSKYDGFRLTYLGYDFLAIRTLVNRGVIASVGRQIG VGKESDIFEVATEDGTVLAMKLHRLGRTSFRAVKSKRDYLRHRSSFSWLYLSRLAALKEFAFMKALEDHGFPVPTAVDCNRHCVIMSLVQGYPLVQVKQV QNPEVIFETVLGLIVRLAEHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHRNAQMFFDRDVECIYKFFSKRYNLSFQDDLEINNSAGVDMDEASRPV FSSISISEGALDKELAASGFTRKNQDEIEKLTEAGIEADSSTDSEEGEDEEHILEPNETSIAKLDSLQLEEQGDEKSSEEDKEKAETQKKSETTESNGLA SEDDSEEEDEDKQKDDEELAKRLDKHKKKAIAAARGRKSRISARNLYKDKGGRSSQSSKVHKMTGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	0	1
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	1.0	0.9616
AT3G47630			unknown protein		Lus10024227 [exp]	1.4	0.9144
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	2.8	0.9020
AT3G47630			unknown protein		Lus10023597 [exp]	3.0	0.9130
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	3.9	0.9005
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10018666 [exp]	6.6	0.8602
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	7.1	0.8784
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	8.5	0.8945
AT1G15420			unknown protein		Lus10007894 [exp]	9.4	0.8770
AT5G50840			unknown protein		Lus10040383 [exp]	9.9	0.8832

Compare expression of checked genes

Lus10017941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.