Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53290 295 / 9e-100 Galactosyltransferase family protein (.1) AT3G14960 294 / 3e-99 Galactosyltransferase family protein (.1) AT2G26100 258 / 1e-84 Galactosyltransferase family protein (.1) AT1G32930 98 / 2e-23 Galactosyltransferase family protein (.1) AT1G11730 96 / 1e-22 Galactosyltransferase family protein (.1) AT1G77810 94 / 8e-22 Galactosyltransferase family protein (.1.2) AT1G05170 92 / 4e-21 Galactosyltransferase family protein (.1.2) AT1G22015 88 / 1e-19 DD46 Galactosyltransferase family protein (.1) AT4G26940 87 / 2e-19 Galactosyltransferase family protein (.1.2) AT2G32430 87 / 2e-19 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013683 [exp] 430 / 1e-152 AT1G53290 497 / 4e-178 Galactosyltransferase family protein (.1) Lus10014451 [exp] 216 / 3e-68 AT2G26100 437 / 1e-153 Galactosyltransferase family protein (.1) Lus10023955 [exp] 214 / 9e-68 AT2G26100 441 / 3e-155 Galactosyltransferase family protein (.1) Lus10001148 [exp] 107 / 2e-26 AT1G05170 458 / 4e-161 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 102 / 1e-24 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 101 / 2e-24 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 96 / 2e-22 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 96 / 2e-22 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 93 / 2e-21 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G111700 [exp] 317 / 6e-108 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 313 / 2e-106 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.006G228900 [exp] 259 / 2e-85 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.018G053150 [exp] 163 / 3e-48 AT2G26100 315 / 2e-106 Galactosyltransferase family protein (.1) Potri.001G450200 [exp] 99 / 1e-23 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.004G013900 [exp] 93 / 2e-21 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 93 / 2e-21 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 91 / 1e-20 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 91 / 1e-20 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 91 / 1e-20 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017943 pacid=23147869 polypeptide=Lus10017943 locus=Lus10017943.g ID=Lus10017943.BGIv1.0 annot-version=v1.0 ATGGCGTCTAAATCTTTCAACTCACGGCCATTTGCATCCCCCGCTTCTCGCAGATCAACTACCTTCGTTGTCATCGTCTCCATCTGCATAGGAATCTCCG GCTTCCTCTTCGGCCTCACCGCGCTTTTCATTTCTCCTTCTTCTCGCTGCTGCGGTGCCCCGCGATCGATGAAGGTCTCGTGGGAGACCAATCCCGCCAT TACTGAACTGAAATCAGACGGAGGAGGAGGCCTCCTTCTGGATGGGGAGAGAACCAGGCACAAGGTTATGGGGTTCGTAGGAATTCAGACTGGTTTCGAA TCTTCAGGTCGGAGGCAGTCGCTCAGGAAGACGTGGATGCCGTCGGATCCCCAAGGACTTCAACGATTGGAAGAGTCTACCGGTTTAGCTTTCAGGTTCG TGATTGGTAAAAGTAAGGATAAACGGAAGATGGCAGAGCTTCAGGAGGAGGTTGAAGCTTATGATGATTTCTTGCTGCTAGATATTGAGGAACAGTACAA TCGTCTTTCGACACTCCTAGCTAAAGAGCGTCCTCATTCTAGGACATATCTTGGCTGCATGAAGAAGGGACCAGTTTTTGGTGATCCGAAACTCAAGTGT TTTAGGATGTTTAGCAATGAGGATGTGACAATCGGATCATGGATGCTGGCCATGAACGTTAATCACGAAGACAACCGAGAACTTTGTGCATCAGATTGCA GTCCAACTTCGATCTCCATATGGGATATTCCCAAGTGTTCAGGCTTATGCAACCCAGAGAAACGATTACTGGAACTGCACAGCAAGGAGGACTGCTCAAA GACACCAACTATCATGTCTGACGATGATTAA
AA sequence Show only first row Show all	>Lus10017943 pacid=23147869 polypeptide=Lus10017943 locus=Lus10017943.g ID=Lus10017943.BGIv1.0 annot-version=v1.0 MASKSFNSRPFASPASRRSTTFVVIVSICIGISGFLFGLTALFISPSSRCCGAPRSMKVSWETNPAITELKSDGGGGLLLDGERTRHKVMGFVGIQTGFE SSGRRQSLRKTWMPSDPQGLQRLEESTGLAFRFVIGKSKDKRKMAELQEEVEAYDDFLLLDIEEQYNRLSTLLAKERPHSRTYLGCMKKGPVFGDPKLKC FRMFSNEDVTIGSWMLAMNVNHEDNRELCASDCSPTSISIWDIPKCSGLCNPEKRLLELHSKEDCSKTPTIMSDDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53290			Galactosyltransferase family p...		Lus10017943 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	1.7	0.9105
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	7.6	0.8928
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	7.7	0.8672
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	9.8	0.8639
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	15.5	0.8746
AT1G80510			Transmembrane amino acid trans...		Lus10003054 [exp]	15.7	0.8565
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	16.5	0.8697
AT3G56130			biotin/lipoyl attachment domai...		Lus10010226 [exp]	18.0	0.8150
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10033490 [exp]	20.3	0.8542
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	23.5	0.8567

Compare expression of checked genes

Lus10017943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.