Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18380 384 / 2e-133 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) AT1G15215 173 / 4e-52 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013684 [exp] 633 / 0 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10038276 [exp] 168 / 6e-50 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10025826 [exp] 132 / 7e-36 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 131 / 3e-35 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10005480 [exp] 99 / 2e-25 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10037564 [exp] 89 / 1e-20 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373300 [exp] 439 / 1e-154 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.011G097500 [exp] 436 / 3e-154 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.018G046200 [exp] 181 / 2e-55 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.001G189200 [exp] 157 / 2e-46 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10017944 pacid=23147929 polypeptide=Lus10017944 locus=Lus10017944.g ID=Lus10017944.BGIv1.0 annot-version=v1.0 ATGGGTCGGCCACCTAGCAACGGTGGCCCTGCCTTCCGCTTCTCGCACAACGAGGTTGCAGAGATGGAAGCGATTCTGCAACAGTACAAGCAAGTAATGC CGTCTCGTGAGGTTCTCGTAGCTATTGCAGATAAGTTCAGTGAATCTCCCGAGCGAAAAGGGAAGATTTCCGTGCAAATGAAACAGGTGTGGAACTGGTT CCAAAACAGGCGTTATGCAATCAGGGCCAAATCAAGCAAGGCTCCTGCAAAGTTAAGTATAACACAAGTGCCTCGGGATGATACGAATACAGTTAGAAAT GCACCGCATCCAGTAGCTCCTCCTGCATTCATAAATGCACCGACTAACATAGCTGCTCCTTCAGGAAGGATGACTCCAGAAAATTCGTACATGGAATTTG AAGCCAAATCTGGAAGAGATGGTGCATGGTATGATGTTGGCTCGTTCATGTCTCATAGATACCTGGACAAGGGCGATCCGGACGTATTGGTTAGATTTTC TGGTTTCGGACCGGACGAGGATGAGTGGATCAATGTTCGCAAGAATGTAAGGCAGCGTTCCCTCCCTTGTGAAGCATCGGAATGTGTGGCAGTTCTTCCT GGAGACCTCATATTATGTTTCCAGGAAGGTAAAGATCAAGCATTATACTTTGATGCACATGTACTTGATGCTCAAAGAAGACGGCACGATGTAAGAGGGT GCCGATGTAGATTTTTGGTGCGTTATGATCATGATCAATCTGAGGAAATCGTGCCTCTGAGAAAAGTTTGCCGAAGGCCAGAAACCGATTACCGGTTGCA GCAACTTCATGCAGCATTGGACTCCACAAGTCAAGAGCAGCCGAAATCTGGTACAGCCGAAAGGGTATCTACTACCTCTGCTATTACAGAAACCATGCCA AAGCAACGAAGCCTTGACTCAATCATGTCGGTGCCAAAAGCCCCGGAAAGTAGCACCAGTGTGGCCGGAAATGCCGGGGTCGTTGCCGTTCGTAGTAGTA TTGCTCCTAGCAGTTCCAGTTAG
AA sequence Show only first row Show all	>Lus10017944 pacid=23147929 polypeptide=Lus10017944 locus=Lus10017944.g ID=Lus10017944.BGIv1.0 annot-version=v1.0 MGRPPSNGGPAFRFSHNEVAEMEAILQQYKQVMPSREVLVAIADKFSESPERKGKISVQMKQVWNWFQNRRYAIRAKSSKAPAKLSITQVPRDDTNTVRN APHPVAPPAFINAPTNIAAPSGRMTPENSYMEFEAKSGRDGAWYDVGSFMSHRYLDKGDPDVLVRFSGFGPDEDEWINVRKNVRQRSLPCEASECVAVLP GDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAALDSTSQEQPKSGTAERVSTTSAITETMP KQRSLDSIMSVPKAPESSTSVAGNAGVVAVRSSIAPSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10017944 [exp]	0	1
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	1.7	0.8301
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10040427 [exp]	4.5	0.8053
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	10.0	0.8041
AT3G23255			unknown protein		Lus10011825 [exp]	10.2	0.8261
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	10.5	0.8058
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Lus10028543 [exp]	11.0	0.8019
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	12.6	0.7929
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	13.0	0.7858
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	16.2	0.7603
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	21.2	0.7864

Compare expression of checked genes

Lus10017944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.