Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58680 225 / 4e-77 MBF1B, ATMBF1B multiprotein bridging factor 1B (.1) AT2G42680 224 / 1e-76 MBF1A, ATMBF1A ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, multiprotein bridging factor 1A (.1) AT3G24500 136 / 6e-42 MBF1C, ATMBF1C multiprotein bridging factor 1C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013686 [exp] 280 / 9e-99 AT3G58680 224 / 5e-77 multiprotein bridging factor 1B (.1) Lus10034592 [exp] 154 / 9e-49 AT3G24500 201 / 1e-67 multiprotein bridging factor 1C (.1.2) Lus10021776 [exp] 147 / 2e-46 AT3G24500 202 / 8e-68 multiprotein bridging factor 1C (.1.2) Lus10000056 [exp] 111 / 4e-33 AT2G42680 100 / 3e-29 ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, multiprotein bridging factor 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G109500 [exp] 234 / 5e-81 AT3G58680 240 / 3e-83 multiprotein bridging factor 1B (.1) Potri.001G390400 [exp] 233 / 2e-80 AT3G58680 242 / 6e-84 multiprotein bridging factor 1B (.1) Potri.018G075200 [exp] 152 / 2e-48 AT3G24500 223 / 4e-76 multiprotein bridging factor 1C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01381 [flax] [poplar] HTH_3 Helix-turn-helix CL0123 [flax] [poplar] PF08523 [flax] [poplar] MBF1 Multiprotein bridging factor 1
Representative CDS sequence Show only first row Show all	>Lus10017945 pacid=23147894 polypeptide=Lus10017945 locus=Lus10017945.g ID=Lus10017945.BGIv1.0 annot-version=v1.0 ATGTCAGGACCATTCTCTCAGGACTGGGAACCCGTCGTAATCCGCAAGAAGGCTCCCACCGCCGCTCTCAAGAAGGATGAGAAGGTAGTTAACGCTGCTC GCCGTGCCGGCGCTGAGATCGAATCCATCAAGAAGTCAAATGCTGGTGTGAACAAGGCTGCTTCTAGCAGTACTTCCTTGAACACAAGGAAGCTTGATGA AGAGACTGAGATTGTTGCTCATGAGCGGGTACCGAGTGAACTGAAGAAGGCCATAATGCAAGGTCGGATGGATAAGAAGCTTACCCAGTCTCAACTTGCT CAGCTCATCAACGAGAAGCCTCAGATAATACAAGAGTACGAGTCCGGAAAAGCCATTCCTAACCAGCAGATTATAGGCAAGTTAGAGAGAGCTCTTGGAG TGAAGCTGCGAGGTAAGAAGTGA
AA sequence Show only first row Show all	>Lus10017945 pacid=23147894 polypeptide=Lus10017945 locus=Lus10017945.g ID=Lus10017945.BGIv1.0 annot-version=v1.0 MSGPFSQDWEPVVIRKKAPTAALKKDEKVVNAARRAGAEIESIKKSNAGVNKAASSSTSLNTRKLDEETEIVAHERVPSELKKAIMQGRMDKKLTQSQLA QLINEKPQIIQEYESGKAIPNQQIIGKLERALGVKLRGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10017945 [exp]	0	1
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	1.4	0.8563
AT1G01170			Protein of unknown function (D...		Lus10042373 [exp]	2.4	0.7980
AT1G56423			unknown protein		Lus10020695 [exp]	8.2	0.8320
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	8.4	0.8083
AT1G76200			unknown protein		Lus10016001 [exp]	9.6	0.8236
AT2G23090			Uncharacterised protein family...		Lus10019287 [exp]	10.6	0.7846
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	12.4	0.7796
AT4G39235			unknown protein		Lus10004160 [exp]	14.2	0.7946
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038868 [exp]	15.2	0.7311
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	20.7	0.7775

Compare expression of checked genes

Lus10017945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.