Plant FIBer expression Database

Lus10017946 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013687
[exp]
176 / 7e-56 ND /
Lus10013688
[exp]
147 / 1e-42 AT1G29010 49 / 2e-06 unknown protein
Lus10042849
[exp]
79 / 2e-16 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10028146
[exp]
69 / 3e-13 ND 41 / 0.002
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10017946 pacid=23147949 polypeptide=Lus10017946 locus=Lus10017946.g ID=Lus10017946.BGIv1.0 annot-version=v1.0
ATGGAGCTCCCTTCAAACCAAAGCTTTTACAGCAACTTGTCCGGCTACGGCGGCTGGGCGGCGGAGGAGGAGGAGAAGACGATTGGGATGAAGAGGGCAC
ATCCCCTGTCCCAGCAGCAGGATAGCACTAGCGTTAACGGCGGCGGCAGCGGTGGCGGGAGCCTTGCTCTTTCTCCTCCTCCTCCATCGTTTATGTACCA
AAGCAACAGCAGTAGCGTGAACAAGCAACAATACCCGTCGGTAGTTCATCACCATCATCACCATGAATCTCCTTCCTCCTTCAATTTTGGGTCCGGACCC
GTCTTCAACTTCTCTTCCTCCAACCCGCCATATTTCAGAGATGGGAGCTTAGGTTGGAATGTGACATGGCAACCTGAGTCCAGGAGAGCAATAAGAGATG
ACAATGGAGGAACAATTGCTACTACATTCCCAGCACAGTTCCTTACTTTGGCTCCTCCTGCAGTTACTCCAACAGCAGCAGGACGACAAGTCTTAGATTC
GAGCCTGATGTTAAACCACCCACATTTTCATCGTTGTACTAGTACCAACAAAATGCTCGAGCTCGATCCCTCAAGCCAAAGCCATAGCCATAGCCATCAC
CATCATCACCACCACCATCAAGGTGGTGAAACGGAAGACGAAGCAGCAAGTGACCATCAACAACAGGGAGTTCGCCATGCCGGCAGCTTATTCTTGCCGC
ACAAATTCATGCAAGACGAAACAACCGAAGAACATGTCGACCTTAACTTGAAGTTATGA
AA sequence
>Lus10017946 pacid=23147949 polypeptide=Lus10017946 locus=Lus10017946.g ID=Lus10017946.BGIv1.0 annot-version=v1.0
MELPSNQSFYSNLSGYGGWAAEEEEKTIGMKRAHPLSQQQDSTSVNGGGSGGGSLALSPPPPSFMYQSNSSSVNKQQYPSVVHHHHHHESPSSFNFGSGP
VFNFSSSNPPYFRDGSLGWNVTWQPESRRAIRDDNGGTIATTFPAQFLTLAPPAVTPTAAGRQVLDSSLMLNHPHFHRCTSTNKMLELDPSSQSHSHSHH
HHHHHHQGGETEDEAASDHQQQGVRHAGSLFLPHKFMQDETTEEHVDLNLKL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10017946
[exp]
0 1
AT3G27030 unknown protein Lus10041550
[exp]
3.9 0.7853
AT3G18670 Ankyrin repeat family protein ... Lus10003282
[exp]
4.5 0.7290
Lus10021106
[exp]
8.0 0.7011
AT5G13700 ATPAO1, APAO polyamine oxidase 1 (.1) Lus10004260
[exp]
8.5 0.7463
AT1G15410 aspartate-glutamate racemase f... Lus10030057
[exp]
14.0 0.6897
AT1G68140 Protein of unknown function (D... Lus10025356
[exp]
16.3 0.7153
AT5G14530 Transducin/WD40 repeat-like su... Lus10032128
[exp]
20.0 0.6816
AT2G16050 Cysteine/Histidine-rich C1 dom... Lus10017477
[exp]
22.0 0.7292
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10042339
[exp]
23.2 0.6849
AT1G65590 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) Lus10022251
[exp]
28.1 0.7065

Lus10017946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.