Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63130 112 / 3e-32 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G48240 103 / 1e-28 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 90 / 3e-23 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 84 / 3e-21 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT3G46920 77 / 4e-17 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 75 / 1e-16 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT4G05150 74 / 4e-16 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 71 / 4e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 70 / 4e-15 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G79570 70 / 9e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043341 [exp] 104 / 6e-29 AT3G48240 145 / 2e-44 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019490 [exp] 102 / 8e-28 AT3G48240 149 / 9e-46 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10026700 [exp] 93 / 2e-24 AT3G26510 135 / 3e-40 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10002938 [exp] 89 / 4e-23 AT3G48240 130 / 1e-38 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10010753 [exp] 77 / 9e-19 AT5G09620 182 / 5e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019577 [exp] 81 / 2e-18 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10035641 [exp] 78 / 2e-18 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 80 / 3e-18 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 78 / 1e-17 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G085000 [exp] 112 / 2e-32 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.015G083400 [exp] 109 / 4e-31 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 100 / 6e-27 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.010G046400 [exp] 94 / 2e-24 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.004G032200 [exp] 79 / 5e-18 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 79 / 6e-18 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.009G080200 [exp] 79 / 7e-18 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 78 / 1e-17 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 77 / 2e-17 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G110000 [exp] 77 / 4e-17 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10017947 pacid=23147870 polypeptide=Lus10017947 locus=Lus10017947.g ID=Lus10017947.BGIv1.0 annot-version=v1.0 ATGGTCAGCGAGAATCACTCGTCCAAGAACACCACCACGCTCTCCAAGACAACCGTCAAGTACCTCTGCAGCTACGGCGGGAAGATCGCCCCTCGTCCCT CCGACGGGCAGCTCCGTTACGTCGGCGGACACACCAGAGTGCTCGCTGCCGATCGCTCCCTTTCATTCGCCGAGCTGTTGATTAAGATCGCCGAGTTCTG CGGTCAGTCAGTGGAATTGAGGTGTCAATTGCCAAACGGAGATCTAGAGACGCTGGTTTCCCCGGGGGCGATCTGTTCCCCTGCGGGGGGCCGTGGAGGT TCCGGGAGAGGTCATTACAGTAGTCCGCGGTATCCAATCGGAATGGGACAGCGCGTCCAGCAAGACAATCTGCTATGCAGATATAGATTTTACTTCTTTT AA
AA sequence Show only first row Show all	>Lus10017947 pacid=23147870 polypeptide=Lus10017947 locus=Lus10017947.g ID=Lus10017947.BGIv1.0 annot-version=v1.0 MVSENHSSKNTTTLSKTTVKYLCSYGGKIAPRPSDGQLRYVGGHTRVLAADRSLSFAELLIKIAEFCGQSVELRCQLPNGDLETLVSPGAICSPAGGRGG SGRGHYSSPRYPIGMGQRVQQDNLLCRYRFYFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	0	1
AT1G47410			unknown protein		Lus10009767 [exp]	2.8	0.9356
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10040158 [exp]	3.5	0.9138
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10007635 [exp]	3.9	0.8945
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	4.2	0.9339
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	4.9	0.9265
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	8.1	0.8983
AT1G47410			unknown protein		Lus10006481 [exp]	8.4	0.8998
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	9.8	0.9042
AT2G01300			unknown protein		Lus10009104 [exp]	11.8	0.8843
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	12.0	0.8986

Compare expression of checked genes

Lus10017947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.