Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11330 483 / 5e-167 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 473 / 2e-163 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT1G12970 303 / 3e-97 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT3G26500 301 / 1e-96 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT4G26050 165 / 9e-46 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G19330 164 / 2e-45 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G29880 156 / 2e-42 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT4G35470 157 / 1e-41 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 146 / 8e-38 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G15410 89 / 1e-18 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013689 [exp] 742 / 0 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10035976 [exp] 167 / 3e-45 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10003229 [exp] 158 / 2e-43 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10016684 [exp] 163 / 1e-42 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 154 / 1e-40 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 129 / 3e-34 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10035622 [exp] 80 / 1e-17 AT2G19330 158 / 8e-48 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 82 / 3e-17 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 81 / 1e-16 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083800 [exp] 545 / 0 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.012G085600 [exp] 541 / 0 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 335 / 9e-110 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.018G139700 [exp] 171 / 2e-48 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 163 / 2e-45 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.005G098600 [exp] 157 / 1e-41 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 153 / 2e-40 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.007G065000 [exp] 149 / 8e-39 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.001G144100 [exp] 147 / 2e-38 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.004G088500 [exp] 86 / 3e-17 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10017948 pacid=23147943 polypeptide=Lus10017948 locus=Lus10017948.g ID=Lus10017948.BGIv1.0 annot-version=v1.0 ATGGATCCCAATCCCAAATCCTTCCCAATCCTCTCCTACGTCATGCAGCGGCTCCCATCGCTCAGCCCCAAGGCTTTCTCCCCTTCCTCCGCCGCTGCTG CACCCGCCGCCGCCCTCGGCAACGTGCGCCCGTACACGCCCTCAGCTCCCTCATCATCTCCCTCATCCTCCTCCTCCCCCTACTCTCCGTCCGGCCAGAC GAAGATGATCCTATCCGAAATGCCGAATCTCAAGGATCCTCACCTCCTCGCGTCCATGACCACCGCCATCTCCGACGTCTCCAACACCCGATCCATCCTC CGCAAGCTGGGGCCCCGGCCCGATCACGAGACGGTGGACAACGCCAAGGCGAAGCTGGCCGAGATGGAGGCGAATCTGTCTAAGCGCCTCGAGGAGATCG TCCTCTCGCCCAGGCCTGAAGAGGTCGACAGGCTGGATTGGAGGCAGCAGCTGGCTAAGAAGGAGGAGGATTGCAGGAAAGAGGCTGAGAAAGAGAAGAG TATCTACGAGACGATACTGAAGCTGGAGGAGATGCACGTGGCGTACGATAAGCTGCTCAAGGAAGCCGAGCAGCGTCTGGTTCAGATGTATGAGACTTCG GGGCGGGTGGAAGGTAAAGAGGAGGTGGAGGAGGCGCAGGTGGCCGAGGAGGTCAATGAAGAGGTCGTCAGGATTCTTCAAGAGGCTACTGGGAAGGGAA TTGAGAAGATTGATTTGAACGGTAGGAAGCTTAGGCATTTCCCCGAGGCGTTTGGCAAGATTCAGGGCTTGAAATTCCTTAATCTGTCCAACAATCAACT TGAGGTTATTCCTGACTCGATAGCTGGGCTAGAGAATCTTGAAGAGCTCAACCTTGCTTCAAATCTTCTGGTAGTACTACCGGATTCAATCGGATTGCTG CACAAGATGAAGCGCTTGAATATCTCTAGCAACAAGCTTGAGGCATTACCAGACTCTATTTCTCACTGCAGGTCACTGGAGGAACTGGATGTGAGCTTCA ATCGTCTTACCTACTTACCAACCAATATCGGATGCGAGATGACAAACCTCCAGAAGTTCTACTTCCAGCTGAACAAAATTCGCTCCATTCCTTCTTCCGT CGGCGAGATGAAATCTCTACGCCACCTGGACGGTCACTTCAACGAGCTCAATGGCCTTCCTCACACGGTTGGGAAGTTATCAAACCTCGAAACTCTAAAT TTGAGCAACAACTTCACCGACATGAAGGAACTCCCGATAACTTTTGGCGAGCTCACGAGTCTCAAGGAGCTCGACCTCAGCAACAACCAGATCCACGCTC TGCCCGACACATTCGGGCAGCTGGACAATTTGGTGAAGCTGAACCTGGAGCAGAACCCGCTGGTGCTTCCTCCGATGGAAGTCGTGAAGGAAGGCGTCCA GGCTGTGAGGGCGTTCATGGCTCAGAGGTGGATCGATATACTGATGGAGGAAGAGAAGAAGGCCACCCTCGAGACGCAAGAAGAAGGCGAAACGGGCTGG TTGACTCGCAGCTCTTCGTGGCTGAAGAACACGGTCACGACTGTTTCGGACTATGTCAGCCCCAAAGCACCCAAGGATGCTGCTTACCTCGAGCAACAGC TGTGA
AA sequence Show only first row Show all	>Lus10017948 pacid=23147943 polypeptide=Lus10017948 locus=Lus10017948.g ID=Lus10017948.BGIv1.0 annot-version=v1.0 MDPNPKSFPILSYVMQRLPSLSPKAFSPSSAAAAPAAALGNVRPYTPSAPSSSPSSSSSPYSPSGQTKMILSEMPNLKDPHLLASMTTAISDVSNTRSIL RKLGPRPDHETVDNAKAKLAEMEANLSKRLEEIVLSPRPEEVDRLDWRQQLAKKEEDCRKEAEKEKSIYETILKLEEMHVAYDKLLKEAEQRLVQMYETS GRVEGKEEVEEAQVAEEVNEEVVRILQEATGKGIEKIDLNGRKLRHFPEAFGKIQGLKFLNLSNNQLEVIPDSIAGLENLEELNLASNLLVVLPDSIGLL HKMKRLNISSNKLEALPDSISHCRSLEELDVSFNRLTYLPTNIGCEMTNLQKFYFQLNKIRSIPSSVGEMKSLRHLDGHFNELNGLPHTVGKLSNLETLN LSNNFTDMKELPITFGELTSLKELDLSNNQIHALPDTFGQLDNLVKLNLEQNPLVLPPMEVVKEGVQAVRAFMAQRWIDILMEEEKKATLETQEEGETGW LTRSSSWLKNTVTTVSDYVSPKAPKDAAYLEQQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	0	1
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10013689 [exp]	1.0	0.9286
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	4.9	0.8989
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	5.9	0.8766
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10006325 [exp]	7.3	0.8922
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	9.4	0.8828
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012894 [exp]	14.4	0.8099
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10041144 [exp]	15.1	0.8572
AT3G01930			Major facilitator superfamily ...		Lus10035203 [exp]	16.4	0.8258
AT3G07425			unknown protein		Lus10038229 [exp]	16.9	0.8285
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	17.0	0.8574

Compare expression of checked genes

Lus10017948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.