Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 364 / 2e-121 MATE efflux family protein (.1) AT1G73700 352 / 7e-117 MATE efflux family protein (.1) AT2G34360 346 / 2e-114 MATE efflux family protein (.1) AT1G71140 328 / 3e-107 MATE efflux family protein (.1) AT1G15150 318 / 1e-103 MATE efflux family protein (.1) AT1G15160 310 / 1e-100 MATE efflux family protein (.1) AT1G15170 310 / 2e-100 MATE efflux family protein (.1) AT1G64820 303 / 2e-97 MATE efflux family protein (.1) AT2G04040 291 / 2e-93 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04080 291 / 2e-93 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019470 [exp] 538 / 0 AT5G52450 378 / 5e-127 MATE efflux family protein (.1) Lus10019492 [exp] 439 / 6e-151 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10041994 [exp] 375 / 2e-125 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 361 / 5e-121 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10001318 [exp] 360 / 7e-120 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10017998 [exp] 337 / 2e-110 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 316 / 7e-103 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018136 [exp] 315 / 2e-102 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 315 / 2e-102 AT1G15170 562 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 399 / 6e-135 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 390 / 1e-131 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 389 / 3e-131 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116700 [exp] 379 / 4e-127 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 340 / 4e-112 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 338 / 2e-111 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 318 / 7e-104 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094700 [exp] 314 / 5e-102 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.008G126500 [exp] 300 / 1e-96 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 297 / 3e-95 AT1G15170 545 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10017949 pacid=23147931 polypeptide=Lus10017949 locus=Lus10017949.g ID=Lus10017949.BGIv1.0 annot-version=v1.0 ATGTCGACCTCGAAGATAAGCGACGTTGACCCGGAAATGTCCAACCCTCCTCAGGAGGCAATTCCAAAGGGTAAATGCTCGAAATTAGGAACTCCGGATA TGGTGGTGGAGCTAGACAAGCTTCTGAAATTGGCAGGGCCAATGCTTTTCGTCAGCTTCCTGCAGTTCAGTCTCCAGATGATGTCTGTCATTATGGTCGG TCGCCTTGGGGAGATCCATCTCGCTTCCGCTTCTCTCACTAGTTCCCTTTCTGGAGTCTCTGGTTACACTGTCATGACCGGGATGGGGGGAGCACTCGAG ACGCTATGCGGGCAAGCCTACGGAGCCGGACAGTACAAAATGGTGGGAATCCACGCCCAAAGAGGAATGCTAGTCCTGGCAATCCTGAGCATACCGATCT CAGTCCTCTGGGGGTTCACGGGCCCGGTCCTAACAATCCTGAAACAGGACCGGTCCATCTCCCAAATGGCGGGACAATCAGCACCCTGGCTGATTCCAAG CATCCTCCCGTTCGGGATCCTACAATGCCAGACCAAGTTCCTACAGACGCAAAGCATTACCTTCCCTCAGATGGCGGGGACGGCCCTTGGCTGCCTGGCC CACGCCCTGTCGTGTTGGGTCTTGATTTACCGGTTCAAAATGGGGAACAGCGGGGCTTGCCTGGCGAACGGGGTGACTTACTGGGCAATCGTGATCGTTC TGGCGGGGTACATTAAGTTTTCGAGGCCGTGTCAGGATACATGGAAAGGTTTCAGCTTTAAGGGTGCAAGTCCTAGAGGTTTGGCCTCGTTCTTGAAGTT GGGGGTTCCTTCAGCTCTCATGATGTGCTTGGAGTTCTGGTCGTATCAGGTTTTTATTGTACTGGCAGGGCTCCTTCCTGACGCAGAGTTGGAGACTTCA ATGATGTTGATCAGCCTCAACACTTCCGCGGCAGTCTTCAGGATCCCCATGAGCCTCGGCAGCGCCGTAAGTACGAGAATTTCGAACGAGCTAGGAGCGG GAAATGCAGATGCTGCAAGGCTAGCAGTGCGAGTCGTGCTGCTACTGGCTGTGTCGCAGGGCATACTAGGCAGCTCGATCGCGACAGCTGCTCGCCATGT GTGGGGTTGTATATACACCAACGACCCGATTTTGATCAAGTACTTGGCCGTGATTGCCCCGAAGATTGCTCTGTCCAACTTTATCGATGGCATCGATGCC GTGCTTTCAGGTTGTATCAGAGGATGCGGGTTTCAGAAGAGAGGTGCATTTATAAGCTTGGGGGCGTATTATCTTGTTGGCATTCCTGTTGCTGCCTTCT TGTCATTTTTCATGAATTACGGAGGGGAGGGATTTTTGCTAGGGATCATAGCTGGGAGCAGTGTGAAGGCCATACTGCTACTGGTAATTACAATGGGCAT CAATTGGGATCATGAAGTTGAGAAGGCCAAGAAAAATGTGGATGAATCAACAGTGGAAGATTAG
AA sequence Show only first row Show all	>Lus10017949 pacid=23147931 polypeptide=Lus10017949 locus=Lus10017949.g ID=Lus10017949.BGIv1.0 annot-version=v1.0 MSTSKISDVDPEMSNPPQEAIPKGKCSKLGTPDMVVELDKLLKLAGPMLFVSFLQFSLQMMSVIMVGRLGEIHLASASLTSSLSGVSGYTVMTGMGGALE TLCGQAYGAGQYKMVGIHAQRGMLVLAILSIPISVLWGFTGPVLTILKQDRSISQMAGQSAPWLIPSILPFGILQCQTKFLQTQSITFPQMAGTALGCLA HALSCWVLIYRFKMGNSGACLANGVTYWAIVIVLAGYIKFSRPCQDTWKGFSFKGASPRGLASFLKLGVPSALMMCLEFWSYQVFIVLAGLLPDAELETS MMLISLNTSAAVFRIPMSLGSAVSTRISNELGAGNADAARLAVRVVLLLAVSQGILGSSIATAARHVWGCIYTNDPILIKYLAVIAPKIALSNFIDGIDA VLSGCIRGCGFQKRGAFISLGAYYLVGIPVAAFLSFFMNYGGEGFLLGIIAGSSVKAILLLVITMGINWDHEVEKAKKNVDESTVED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10017949 [exp]	0	1
					Lus10019796 [exp]	1.4	0.8567
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10013067 [exp]	5.7	0.8400
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	8.9	0.8481
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	11.8	0.8375
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	12.6	0.8288
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	15.2	0.8270
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	17.0	0.8195
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	18.0	0.8276
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10038062 [exp]	18.2	0.8205
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	19.2	0.8243

Compare expression of checked genes

Lus10017949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.