Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24690 404 / 1e-130 AtNBR1 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043320 [exp] 322 / 7e-98 AT4G24690 290 / 1e-86 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Lus10019471 [exp] 162 / 7e-43 AT4G24690 173 / 3e-47 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G084000 [exp] 553 / 0 AT4G24690 490 / 5e-164 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.012G085700 [exp] 442 / 2e-144 AT4G24690 497 / 2e-166 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.012G085450 [exp] 305 / 2e-96 AT4G24690 279 / 2e-87 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10017950 pacid=23147934 polypeptide=Lus10017950 locus=Lus10017950.g ID=Lus10017950.BGIv1.0 annot-version=v1.0 ATGGAGATGCAGTCTGATTTTGTGATCAAGGTTAGGTATGGTGATACTTTGAGGAGGTTCAATGCCTCCATTAAGGAGGATGGACAGCTTGCTATTGACT TGGAAGGTCTTAGGGCTAAGGTCCTTGGTCTGTTCAACTTGCCTCCCGATGCTGAAATGAAACTTACTTACGTGGATGAAGATGGCGATGTTGTCACTCT TGTCGAGAATTACGATCTGCAAGATGTCACGAGGCAGAATCTCAAGTTCTTGAGGGTCGAAGTTACTCTCTTGAATGCCAAAGATGGCTCCTCAACCTCT GCTGCTGCGCCTAGTGGGAGTTCTACCCCCTCAAGGTCTACCCCTGGTGTTGCTGAGGTGCTGAACAATCTGCCACCACAGCTACACGAGGCTGTTTCAA AGTTTTCTCGTGATGTTGCTTCGAAAGCTGCTGCTGCTGCATCTGGCTCTCGGGCTAGGGCCGAGTCTGGTGTTGCTGATGTGCTGAAGACCCTGCCACC GCAGCTCTACGAGGCTGTTTCGAAGATTTCGAGTGATTTAGCCTCTAAAGCTGCTGCTGCCTCAAGTTCTCAGGCTAGCACCGGTGTGCCTGACGTTCCA AAGGCGATAACCGACCTTGTTGAGAGCTTGTCAAAAATCGGGCTTTCCTACGTTGGTAATAATAACCAGCCGCCTCAGGTTGCCAGTAATGCTAGAGCTG CAAATGTCCCTACTGCACCACCGCAGGAAGACCTGGTTAAATCTAGCACAGCGTCTGGCACTACACCGGGTGGGGCAGGGCCATCGAAATCTATTTCTAC CCCTGTCAATTTGAACCTGCAACCTCCTAGTGGGAAAAAAACTGCACAGCCCATGGCTAACATGGAAACTGGGATGGGAACGATGAATGCTGGGATGTGG GGTCCTTTGAAAGGATGGCCATTATCTGGGATTCCAGTGGCTGGCCGCCGAAGCGTGCAGCCCCCGCCTCCTCCTCCACATATGAAACTATTTAAGAGGT GCCACAGCCGTCGCAATGATGGCATGGTCGGCTTGTTTCACCGAGGCGTTCAATGTGATGGGTGTGGGATGCATCCCATTGCAGGACCTCGATACAAGTC CAAAGTAAAGGAAAATTACGACCTTTGCAACGTTTGCTTTGCGGAATTGGGCGACGAGGCTGACTACATCAAGATGGATAAACCCATGTCTTATAGACAT TCGAGGTCTCTCAGGGGCTTGAATCATCCTGCTCCTGTTTGGATGACACAAGTGGGATGTGCTCCTCCGAAGTTGGACAGTCGCTTCATTTCTGATGTGA ATGTAGTGGATGGTACCATGGTTGCTCCGTCGATTCCATTTACTAAGATATGGAGGCTTCGCAACAATGGTGGCCTTGTGTGGCCGCAGGGAACTCAGCT TGTGTGGATTGGAGGAGACCGATTCAGCCTTACAGATGTGGTTGAGCTAGAGATTCCCAAGGATGGTCTGCCTTTGGAAGCAGAACTTGATGTTGCCGTT GATTTCACTTCTCCGGCATTACCCGGACGATACATCTCATACTGGAGAACTGCATCGTCATCTGGAATGAAATTCGGTCAGCGCATCTGGGTTCTTATCC AGGTGGATGCTTCTCTCAAAGAACCTTCTGCTGGACTTCCCGTGGACTTCAACTTAAATTTCTCCCCTGTTAGTGCTGCATCCATTCAATCCGAGTCGGC CGACTTGAATGGCAAGTCTGTCTTCGATTTCCCCCCTCTCAGTGCTGCATCGATTCGACCTGAGTCGGACGTGAATGGCAAGGCTGTGGAGACACCTTTG GCTCCATCCTCGTCTTCAAAGGGCGGCATGCCCGTCTTCGATCAGGAGAAGAATTTCCCTGTAAATGATTCTCTTCTCGTGGGGAGAACCACCTCGTCCC GGGCATCTCCCACCATCTCCTATCCTATGATAGACATGTCCGATCTCCCTGCAGCAAATGCTGTGAATGAACCACCCACTGCACCAGAAGGCATGGAAGT AGATGAGGCAGAGATGAATGACGTGGAGGCAACCCTTTTGAAGGAGCTGGAGGAAATGGGATTCAAGCAGATCAATAGGAACAAGGAGGTCCTAAGGATG AACGAGTACAACCTGGAGCAGTCGCTGGACGATCTGTGTGGTGTCGGGGAGTGGGATCCGATCCTTGAAGAGCTGGAAGAGATGGGTTTCAGTGACAAGG AGATGAACAAGAAGCTGCTAAAGAAGAACAACGGGAGCATCAAGCGTGTTGTGATGGACATCCTTACTGGAGAGAAGGCCTAG
AA sequence Show only first row Show all	>Lus10017950 pacid=23147934 polypeptide=Lus10017950 locus=Lus10017950.g ID=Lus10017950.BGIv1.0 annot-version=v1.0 MEMQSDFVIKVRYGDTLRRFNASIKEDGQLAIDLEGLRAKVLGLFNLPPDAEMKLTYVDEDGDVVTLVENYDLQDVTRQNLKFLRVEVTLLNAKDGSSTS AAAPSGSSTPSRSTPGVAEVLNNLPPQLHEAVSKFSRDVASKAAAAASGSRARAESGVADVLKTLPPQLYEAVSKISSDLASKAAAASSSQASTGVPDVP KAITDLVESLSKIGLSYVGNNNQPPQVASNARAANVPTAPPQEDLVKSSTASGTTPGGAGPSKSISTPVNLNLQPPSGKKTAQPMANMETGMGTMNAGMW GPLKGWPLSGIPVAGRRSVQPPPPPPHMKLFKRCHSRRNDGMVGLFHRGVQCDGCGMHPIAGPRYKSKVKENYDLCNVCFAELGDEADYIKMDKPMSYRH SRSLRGLNHPAPVWMTQVGCAPPKLDSRFISDVNVVDGTMVAPSIPFTKIWRLRNNGGLVWPQGTQLVWIGGDRFSLTDVVELEIPKDGLPLEAELDVAV DFTSPALPGRYISYWRTASSSGMKFGQRIWVLIQVDASLKEPSAGLPVDFNLNFSPVSAASIQSESADLNGKSVFDFPPLSAASIRPESDVNGKAVETPL APSSSSKGGMPVFDQEKNFPVNDSLLVGRTTSSRASPTISYPMIDMSDLPAANAVNEPPTAPEGMEVDEAEMNDVEATLLKELEEMGFKQINRNKEVLRM NEYNLEQSLDDLCGVGEWDPILEELEEMGFSDKEMNKKLLKKNNGSIKRVVMDILTGEKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	0	1
AT4G02920			unknown protein		Lus10008158 [exp]	8.5	0.9678
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	8.9	0.9649
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	9.5	0.9435
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	9.8	0.9694
AT1G74360			Leucine-rich repeat protein ki...		Lus10003477 [exp]	10.8	0.9586
AT2G02370			SNARE associated Golgi protein...		Lus10007583 [exp]	13.3	0.9572
AT4G02920			unknown protein		Lus10008160 [exp]	18.4	0.9654
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	19.7	0.9583
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	21.8	0.9670
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	23.6	0.9623

Compare expression of checked genes

Lus10017950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.