Plant FIBer expression Database

Lus10017951 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24700 52 / 4e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041942
[exp]
145 / 2e-45 AT4G24700 65 / 7e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G084200
[exp]
69 / 2e-15 AT4G24700 88 / 6e-23 unknown protein
Potri.012G086300
[exp]
66 / 3e-14 AT4G24700 70 / 1e-15 unknown protein
Potri.012G086000
[exp]
65 / 5e-14 AT4G24700 73 / 4e-17 unknown protein
Potri.004G085100
[exp]
47 / 9e-07 AT5G37550 80 / 2e-18 unknown protein
PFAM info
Representative CDS sequence
>Lus10017951 pacid=23147996 polypeptide=Lus10017951 locus=Lus10017951.g ID=Lus10017951.BGIv1.0 annot-version=v1.0
ATGAAGCAAAAGAAGGCAGCAGCGGAGGATAACCCAAGTGACGGCCAAGGCTCTGCCACCGGTGAGGAAATTCTGAAGGCAGTGGCACAAGCATGGTACT
CCCGCTCCGGCGGCAGCAACTCCAACCCCACAAGCGAGTACGATGCTCCCCGGCGGCGCAATTCCGACGGCCGCAATCGGCCTTCAAGGTTCAGGACTGA
GGCGGCATCATCCAGCGCTAAAAACCAGGCATCGGGATCATCAATTGGAAGCAGCTGGGATTTCAGAAAGTCGTTGCTGGATTCCTATGAGATTGTGACG
CTGTCTAAGAAGCTGGAAGAGAGGGGTATTTCCCTGGATGACGATGATGACGTCAGTACACGGCGGCTGAAAAGGGAGAGCAAGAGTAGCCTAAGGAACT
TGCTCAATCGAATGTCTTCTTCGTCCAAGAGATTCAGTTATTGA
AA sequence
>Lus10017951 pacid=23147996 polypeptide=Lus10017951 locus=Lus10017951.g ID=Lus10017951.BGIv1.0 annot-version=v1.0
MKQKKAAAEDNPSDGQGSATGEEILKAVAQAWYSRSGGSNSNPTSEYDAPRRRNSDGRNRPSRFRTEAASSSAKNQASGSSIGSSWDFRKSLLDSYEIVT
LSKKLEERGISLDDDDDVSTRRLKRESKSSLRNLLNRMSSSSKRFSY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24700 unknown protein Lus10017951
[exp]
0 1
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10010765
[exp]
4.2 0.8982
AT4G13990 Exostosin family protein (.1) Lus10005492
[exp]
5.0 0.9025
AT1G11340 S-locus lectin protein kinase ... Lus10030766
[exp]
5.7 0.9010
AT3G19340 Protein of unknown function (D... Lus10012584
[exp]
13.4 0.7582
AT3G01650 RGLG1 RING domain ligase1 (.1) Lus10003654
[exp]
14.9 0.7374
AT5G10530 Concanavalin A-like lectin pro... Lus10042309
[exp]
15.5 0.8589
AT4G37870 PCK1, PEPCK phosphoenolpyruvate carboxykin... Lus10019242
[exp]
15.6 0.8731
AT3G11080 AtRLP35 receptor like protein 35 (.1) Lus10004307
[exp]
18.2 0.8175
AT4G35160 O-methyltransferase family pro... Lus10008538
[exp]
19.7 0.8545
AT2G25930 PYK20, ELF3 EARLY FLOWERING 3, hydroxyprol... Lus10006857
[exp]
21.2 0.8536

Lus10017951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.