Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 137 / 9e-37 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 135 / 5e-36 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 100 / 1e-23 Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 90 / 3e-20 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G56145 90 / 4e-20 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G20140 86 / 1e-18 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 84 / 2e-18 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G56130 84 / 3e-18 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 83 / 9e-18 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 82 / 1e-17 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 200 / 2e-58 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 196 / 5e-57 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 154 / 2e-42 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 143 / 1e-38 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 100 / 2e-23 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 99 / 3e-23 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 87 / 3e-19 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10004046 [exp] 86 / 1e-18 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 86 / 2e-18 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106400 [exp] 146 / 1e-39 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025566 [exp] 141 / 3e-38 AT1G53440 754 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 140 / 1e-37 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 140 / 1e-37 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 139 / 2e-37 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 137 / 1e-36 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 137 / 2e-36 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385750 [exp] 122 / 8e-33 AT1G53430 274 / 4e-84 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 105 / 2e-25 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072566 [exp] 103 / 1e-24 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10017953 pacid=23148008 polypeptide=Lus10017953 locus=Lus10017953.g ID=Lus10017953.BGIv1.0 annot-version=v1.0 ATGGGTTATTCTCCGACGACGACAACTTCCCAGGGAAGCAGAGTACTCTGCCCCAGAGTATTCTCCAAATGGGTTATTCTCCAACCTGAACCGAAGCAGG ATGTTCCGCAGACTGCAGAGGAGGTTCAAGCAGGGTCCGAACAGGCGAACATGGATGGAAGAGAGCTTTCACCGCCGGATAATATGCAATATCCAGGAAG TTTCAGAACACTGGATGGAATGGGATTACCAGGGATTCATGTGGCAGCCCCGAGTGGAACCGCATCATCGTCGCTGGTGACATTGAAAGCAACGTCACCT GCGACTGCTCTTTCTCCAGTGGCACTGAAGCTGAAAGACTATAACTTGACAGGAATTCTAGCACCTGAACTCTGCAACCTTACCCATCTAACTGAGCTGT ATCTTATTGGAAACCGACTGAGTGGCCCTATCCCCTCTGAGATAGGCAACATTGCTAATCTGGAATCTCTGGTGTTGGAAGATAATCTATTAACAGGACC TCTGCCTCGAAGCCTTGGAAACCTGAGAAGCTTGACTAGACTCCTTCTTTCTGCAAACAACTTTACGGGTTCCGTACCAGATAACTTCGGAAATTTAAGA ACCCTCACTGATTTGATAGATGGGAACAGTTTGTCTGGACGGCTGCCAGAATTTATGGGGAACTGGACCAATCTTAAGCGACTGGATTTGCAAGGCACGT CATTGCAGGGTCCTATTCCTTCCAGCATATCCACATTGAAGAATGTGACAGATCATTCCTGTGCTATTTCTCCTAAAAACTAA
AA sequence Show only first row Show all	>Lus10017953 pacid=23148008 polypeptide=Lus10017953 locus=Lus10017953.g ID=Lus10017953.BGIv1.0 annot-version=v1.0 MGYSPTTTTSQGSRVLCPRVFSKWVILQPEPKQDVPQTAEEVQAGSEQANMDGRELSPPDNMQYPGSFRTLDGMGLPGIHVAAPSGTASSSLVTLKATSP ATALSPVALKLKDYNLTGILAPELCNLTHLTELYLIGNRLSGPIPSEIGNIANLESLVLEDNLLTGPLPRSLGNLRSLTRLLLSANNFTGSVPDNFGNLR TLTDLIDGNSLSGRLPEFMGNWTNLKRLDLQGTSLQGPIPSSISTLKNVTDHSCAISPKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53430			Leucine-rich repeat transmembr...		Lus10017953 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10006772 [exp]	3.5	0.8817
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10011488 [exp]	3.5	0.9094
AT1G11340			S-locus lectin protein kinase ...		Lus10007611 [exp]	4.0	0.8619
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008420 [exp]	4.2	0.8428
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	9.8	0.8564
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	20.3	0.8687
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	23.7	0.8201
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	23.9	0.8433
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	28.0	0.8478
AT4G28940			Phosphorylase superfamily prot...		Lus10023668 [exp]	29.5	0.8269

Compare expression of checked genes

Lus10017953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.