Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26990 73 / 1e-14 Drought-responsive family protein (.1) AT3G06760 73 / 1e-14 Drought-responsive family protein (.1.2) AT5G49230 68 / 5e-13 HRB1 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) AT3G05700 68 / 8e-13 Drought-responsive family protein (.1) AT1G56280 60 / 2e-10 ATDI19 drought-induced 19 (.1.2) AT4G02200 56 / 9e-09 Drought-responsive family protein (.1.2.3) AT1G02750 53 / 1e-07 Drought-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031467 [exp] 75 / 5e-15 AT5G26990 253 / 1e-85 Drought-responsive family protein (.1) Lus10002441 [exp] 70 / 2e-14 AT5G26990 95 / 3e-25 Drought-responsive family protein (.1) Lus10001462 [exp] 71 / 9e-14 AT3G05700 124 / 5e-35 Drought-responsive family protein (.1) Lus10037819 [exp] 70 / 2e-13 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10015412 [exp] 63 / 4e-11 AT5G26990 123 / 1e-34 Drought-responsive family protein (.1) Lus10041945 [exp] 60 / 7e-11 AT1G56280 42 / 2e-05 drought-induced 19 (.1.2) Lus10013420 [exp] 61 / 3e-10 AT3G06760 124 / 3e-35 Drought-responsive family protein (.1.2) Lus10010305 [exp] 52 / 2e-07 AT3G06760 108 / 5e-29 Drought-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086500 [exp] 122 / 2e-32 AT1G56280 92 / 6e-23 drought-induced 19 (.1.2) Potri.011G057200 [exp] 76 / 1e-15 AT3G06760 110 / 2e-29 Drought-responsive family protein (.1.2) Potri.005G020900 [exp] 75 / 3e-15 AT3G05700 224 / 3e-74 Drought-responsive family protein (.1) Potri.013G011200 [exp] 75 / 4e-15 AT3G05700 250 / 1e-84 Drought-responsive family protein (.1) Potri.010G000800 [exp] 65 / 7e-12 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.019G027300 [exp] 62 / 1e-11 AT5G49230 123 / 1e-36 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 59 / 7e-10 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.014G125500 [exp] 55 / 2e-08 AT3G05700 148 / 2e-44 Drought-responsive family protein (.1) Potri.002G200500 [exp] 52 / 2e-07 AT3G05700 152 / 7e-46 Drought-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10017956 pacid=23147965 polypeptide=Lus10017956 locus=Lus10017956.g ID=Lus10017956.BGIv1.0 annot-version=v1.0 ATGTCCGACTTCGGTGATCATGAGTACTTTAGTGATGATGAGGGGTATGAGAGTGATCCTGTTGATGAGGGTTTGCTTGCTGAGAGAGAAGTTATTATGG CTGAGCATATTTCAGATTTAGATTACTATCTGAATTTAGAACTGGCTCCTGAGAGGAATCCAGGACGTCCAACACCAGCTGGTGCCATTGACACCAGGCC ACTGGTTCCATTGGGCACCATATACGAGAGGACCTATCCTCCTGCCAGGTTCAATCCAGGACGACCAACACCAGCTGATGCCATTGAGACCAGGCCACTG GTTCCATTGACCACCATATACGAGAGGACCAATCCTCCTGCCAGGTTCAATCGAGGACGTCCAACACCGGCTGATGCCATTGAGACCAGGCCACTGGTTC CATTGGCCACCATATACGAGAGGACCAATCCTCCTGCCGGGTTCAATCCTGGAAATGGAGCTCGTCGTGCTGAGAGAGTTCTTAGGGCCGTGCCTGCTGA TGAGGAGAATCCGGATGATCCAACGCCAGCTGATGCCATTCCGACCAGGCCCCTCGGGTTTGGTCCTGAGGATGGAGTTGCTCTTGCTGCGCTTATGAAC ATGCGGCGCGAGCTGTACAATACACCAGCAGGTGCCGTTCCAACCAGGCCCCCGGTTGAACCACTGGGTATCACAAACCAGGAGACCAATCCTGCTGCTA GGTTTGGTTCTGAAGATGAAGCTATTGATGCTGACACAGCAGCCATTGTGCCTGGTATCATTGGTACGCTTGACAATTGGAGTGTAGGACCGGAGCTTCC AATGCTGGCAGATCCCGTTTCAACCGGGCCTCTGGTTCCATTGGGTACCATAGACCAGGAGCAGCTTGACAGCATCCGTGTTGCTTTCTCGGATATGGGA AGTGGGGATGAGCGTGCTGGTGGCGACGGGGAGGAGTTGCCTCAATATGATAGTTTTTCTGATGAAGATATCCATTTGGGACTGAACGAATCGGAGGGAT CAGATGCAAATGCCAGGGCTAGCTTCCCTTGCCCCTTTTGCTATGTGGATATTGAAGTTCAGGTCCTCTGCTCCCACCTCGAAGATGAACACTGCTTCAA CCTGAAAGATGCTGTGTGCCCTCTTTGTGCAGCAAACCTTGGGAAAGATGTCACTGGACATTTCATAGCACAGCACGCTAACTCCTTCAAGGTCTCACTA CTGAATACCGACTCAATAGGACTTTGTCGCCGCAGCAGTTCGGAGGTGTCCCCTGATGATGAGGCAGACCGTGAAGAGAAGAGGCAGATGGCGGATTTCA TTCAGGAGCTGGTCGTATCGACAGTCTTCAAATATTGA
AA sequence Show only first row Show all	>Lus10017956 pacid=23147965 polypeptide=Lus10017956 locus=Lus10017956.g ID=Lus10017956.BGIv1.0 annot-version=v1.0 MSDFGDHEYFSDDEGYESDPVDEGLLAEREVIMAEHISDLDYYLNLELAPERNPGRPTPAGAIDTRPLVPLGTIYERTYPPARFNPGRPTPADAIETRPL VPLTTIYERTNPPARFNRGRPTPADAIETRPLVPLATIYERTNPPAGFNPGNGARRAERVLRAVPADEENPDDPTPADAIPTRPLGFGPEDGVALAALMN MRRELYNTPAGAVPTRPPVEPLGITNQETNPAARFGSEDEAIDADTAAIVPGIIGTLDNWSVGPELPMLADPVSTGPLVPLGTIDQEQLDSIRVAFSDMG SGDERAGGDGEELPQYDSFSDEDIHLGLNESEGSDANARASFPCPFCYVDIEVQVLCSHLEDEHCFNLKDAVCPLCAANLGKDVTGHFIAQHANSFKVSL LNTDSIGLCRRSSSEVSPDDEADREEKRQMADFIQELVVSTVFKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26990			Drought-responsive family prot...		Lus10017956 [exp]	0	1
					Lus10024213 [exp]	2.4	0.8689
					Lus10002061 [exp]	6.0	0.8202
AT5G62890			Xanthine/uracil permease famil...		Lus10029191 [exp]	8.5	0.8502
AT3G51150			ATP binding microtubule motor ...		Lus10010624 [exp]	8.8	0.7685
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	11.6	0.8316
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10017139 [exp]	17.2	0.8069
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10021334 [exp]	18.3	0.7776
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	19.9	0.8165
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	20.2	0.8189
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	20.7	0.8072

Compare expression of checked genes

Lus10017956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.