Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20360 705 / 0 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT3G48260 592 / 0 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 492 / 4e-163 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G28080 486 / 3e-162 WNK9 Protein kinase superfamily protein (.1.2) AT4G02930 484 / 9e-162 GTP binding Elongation factor Tu family protein (.1) AT3G18750 478 / 7e-158 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 476 / 4e-157 WNK7 Protein kinase superfamily protein (.1.2) AT3G51630 458 / 2e-150 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 443 / 3e-144 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G04910 444 / 7e-143 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041947 [exp] 953 / 0 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10041946 [exp] 778 / 0 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10043342 [exp] 717 / 0 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 650 / 0 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10020236 [exp] 520 / 3e-172 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 518 / 2e-171 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 503 / 4e-166 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10010547 [exp] 500 / 4e-165 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10027995 [exp] 477 / 2e-158 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086700 [exp] 736 / 0 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.001G110200 [exp] 720 / 0 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.015G084600 [exp] 716 / 0 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.003G121600 [exp] 715 / 0 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.013G036300 [exp] 521 / 3e-172 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 517 / 2e-170 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 512 / 7e-169 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 505 / 7e-166 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.002G215900 [exp] 484 / 4e-162 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 483 / 2e-161 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10017957 pacid=23147921 polypeptide=Lus10017957 locus=Lus10017957.g ID=Lus10017957.BGIv1.0 annot-version=v1.0 ATGTCACAGGACTCGTCGTCTGAGCAAGACCCTGAAGATTCCGACTCCGATTTCGTCGAGAAAGATCCCACCGGTCGCTACGGTCGGTACAAAGAGATTC TGGGCAAAGGTGCTTTCAAGAAAGTATACAGAGCATTTGATGAATTTGAAGGCATAGAAGTAGCTTGGAATCAGGTGAAAGTTGCAGATCTGCTGCGTAA TTCTGTCGATTTGGAGCGGTTGTATTCCGAGGTTCATCTGCTAAAGACGTTGAAGCATAAGAACATCATCAAATTCTACAATTCGTGGGTCGATACCAAA AGTGAGAACATCAACTTCATCACTGAGATCTTCACTTCTGGAACTCTGCGCCAGTACCGCAAGAAGCACAAGCATGTCGATTTAAGAGCATTGAAGAAAT GGTCGCGACAGATTCTGGAAGGGCTTCTGTACCTTCATAGCCATGACCCGCCTGTCATTCATAGAGATTTGAAATGTGACAACATCTTTGTTAATGGGAA CCAAGGTGAGGTGAAGATTGGGGACTTGGGTTTGGCGGCCATTCTCCAACAGGCTCGGGCTGCTCATAGTGTCATCGGTACGCCCGAGTTCATGGCGCCC GAGCTTTACGAGGAGGAATACAATGAGCTTGTTGACATCTATGCATTTGGGATGTGCTTGTTGGAGCTAGTCACCTTTGAGTACCCGTATGTCGAGTGTT CTAATGCTGCTCAAATATATAAGAAAGTTACACTGGGTGTAAGACCAGCATCGTTGGTAAAGGTAAAGGATGAAAATGTGAAAGCATTTATTGAGAAGTG TATAGCAAAAGTTTGTGATCGATTATCCGCAAGGGAACTGTTAATGGATCCTTTTCTTAGATCAGATGGAGAAAGTGAATCCATAGCTCGTGCTTTACCA CCAAGTGTCAAAAGTTCAGGTTCTGATCATACGAATTTCTTAAGAATTGGCGAAAATAGTTCAAACGATCATAGTAGAGATTTCATTGTCCAAGGTCAAA GGAAGGACGTGAATACAATTTTCTTAAAATTACGAATTGCAGACTCCACAGGTCACTTTCGAAATATCCACTTCCCTTTTGACATTGAAGTCGACACTGC AATTGCCGTGGCTAGTGAAATGGTGGAAGAGTTGGACTTAACTGATCAAGATGTTTCAATGATAGCTGCGATGATTGATACAGAAATTCGATCTCACATT CCAAATTGGGCAGCTGAGCAAACCGATTTAGTTGGAGAGATTACTGATCCAGAGGTTACTGATACTGAAAGTAAGGACATTGAGAACAGAGATGATGGTT CTCCATTCTCCAGTGAATCAACTTGTTCTAGCATTCTTGCGTTGGAAAGATTGCCGTCAGGAAGGAAATACTGGTCCGACTCTCCTAGGACATTTGGTAT AAGCTCTCCGAAAAGGCCTGGATCATCTAATTTGATGGATCATGAAGCTTGTGCCACAAGTAACCACGAGCACGATGATCATCATACGGGTCTTGATGCA GATTCCGATGATGATAATGGAAGCAAAGCAAAAGCGGGTAGCCACTCCCTCTGCCCTCAATCCAACAATAAGATAACGAATCCAATCCTCTCCAGTCTCC TCCATTTCTCCGCCATGGCAATCTCCACCCCCAACACCGCCGTCTCTTCCTCTAGGCTCGCCGCCGTCTCCTCCTCCTCCTCCGCTGCTTTCACCACTTT CAATTTCTCCTCTCAACCAACCACCAAATCCCGCCTCCTCTCTTCCCCATTCGTCTCCCCTTGCCTCACTGTCACTTCCACGTCCTCCGTCCTCCGCCGC CGCCGCGGCGGAGACTCCTCGTTCACAGTCAGAGCCGCAAGAGGGAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACAATCGGCCATGTCGACC ACGGCAAGACCACATTAACCGCCGCCCTAACCATGGCGCTCGCCGCCATGGGAAACAGCGCCCCCAAGAAGTACGACGAAATCGACGCCGCCCCTGAAGA ACGCGCCAGAGGAATCACAATCAACACCGCCACCGTCGAGTACGAGACTGAGAGCCGCCACTACGCCCACGTGGACTGCCCAGGACACGCCGATTACGTC AAAAACATGATCACCGGCGCCGCACAGATGGACGGAGCCATTCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAGACCAAAGAGCACATTTTGCTCG CCAAGCAGGTTGGAGTCCCCAACATGGTGGTATTCATGAACAAACAGGACCAGGTAGACGACGAGGAGCTTCTTCAATTGGTCGAATTGGAGGTTCGTGA ACTCTTAACCTCTTACGAATTCCCCGGCGACGATATTCCGATCATTTCCGGTTCAGCTCTTTTAGCCTTGGAAGCACTAATGGCCAATCCGGCAATCAAA AGAGGGGAAAACGAATGGGTGGATAAGATCTATCAACTTATGGATTCCGTCGACAGTTACATTCCCATTCCACAACGGCAGGTAGATTTGCCGTTCTTGC TCGCCGTTGAAGATGTGTTCTCGATCACCGGTCGTGGAACTGTCGCCACCGGAAGAGTTGAGAGGGGGAAAATTAGAGTTGGTGAGACTCTAGCATTGGT AGGGTTAAGAGAAACCAGAGAAACTATTGTTACAGGTGTGGAAATGTTCCAGAAGATTCTTGACGAAGCAATGGCGGGTGATAATGTGGGGCTTTTGCTT AGAGGTATGCAGAAGGCTGATATCCAGAGAGGGATGGTGTTAGCTAAGCCCGGGACGATCACTCCCCATACGAAATTCGAGGCGGTTGTTTACGTGCTGA AGAAGGAAGAAGGCGGTAGGCATTCGCCGTTTTTCGCAGGGTACAAGCCGCAGTTCTACATGAGGACTACTGATGTCACGGGGAAAGTTACGTCGATTAT GAACGACAAGGACGAGGAGTCAAAGATGGTTATGCCCGGGGATCGAGTTAAGATGATCGTGGAGCTCATTATGCCTGTGGCTTGTGAATCTGGAATGCGG TTCGCCATCAGAGAAGGTGGGAAGACTGTTGGAGCTGGCGTCATCGGCAAAATCCTCGAGTAA
AA sequence Show only first row Show all	>Lus10017957 pacid=23147921 polypeptide=Lus10017957 locus=Lus10017957.g ID=Lus10017957.BGIv1.0 annot-version=v1.0 MSQDSSSEQDPEDSDSDFVEKDPTGRYGRYKEILGKGAFKKVYRAFDEFEGIEVAWNQVKVADLLRNSVDLERLYSEVHLLKTLKHKNIIKFYNSWVDTK SENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARAAHSVIGTPEFMAP ELYEEEYNELVDIYAFGMCLLELVTFEYPYVECSNAAQIYKKVTLGVRPASLVKVKDENVKAFIEKCIAKVCDRLSARELLMDPFLRSDGESESIARALP PSVKSSGSDHTNFLRIGENSSNDHSRDFIVQGQRKDVNTIFLKLRIADSTGHFRNIHFPFDIEVDTAIAVASEMVEELDLTDQDVSMIAAMIDTEIRSHI PNWAAEQTDLVGEITDPEVTDTESKDIENRDDGSPFSSESTCSSILALERLPSGRKYWSDSPRTFGISSPKRPGSSNLMDHEACATSNHEHDDHHTGLDA DSDDDNGSKAKAGSHSLCPQSNNKITNPILSSLLHFSAMAISTPNTAVSSSRLAAVSSSSSAAFTTFNFSSQPTTKSRLLSSPFVSPCLTVTSTSSVLRR RRGGDSSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAAMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYV KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFMNKQDQVDDEELLQLVELEVRELLTSYEFPGDDIPIISGSALLALEALMANPAIK RGENEWVDKIYQLMDSVDSYIPIPQRQVDLPFLLAVEDVFSITGRGTVATGRVERGKIRVGETLALVGLRETRETIVTGVEMFQKILDEAMAGDNVGLLL RGMQKADIQRGMVLAKPGTITPHTKFEAVVYVLKKEEGGRHSPFFAGYKPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMIVELIMPVACESGMR FAIREGGKTVGAGVIGKILE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	1.7	0.8678
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	7.1	0.8381
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10018115 [exp]	8.1	0.8542
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10041260 [exp]	8.7	0.8313
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	8.9	0.8640
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	9.3	0.8665
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10021967 [exp]	12.1	0.8214
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	12.2	0.8496
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	13.7	0.8370
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	14.1	0.8396

Compare expression of checked genes

Lus10017957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.