Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24240 155 / 4e-46 Ribosomal protein L19 family protein (.1) AT4G11630 155 / 4e-46 Ribosomal protein L19 family protein (.1) AT5G11750 155 / 4e-46 Ribosomal protein L19 family protein (.1) AT4G17560 81 / 1e-17 Ribosomal protein L19 family protein (.1) AT5G47190 81 / 1e-17 Ribosomal protein L19 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041948 [exp] 397 / 1e-140 AT4G11630 219 / 4e-72 Ribosomal protein L19 family protein (.1) Lus10023720 [exp] 79 / 9e-17 AT4G17560 224 / 3e-74 Ribosomal protein L19 family protein (.1) Lus10014467 [exp] 78 / 1e-16 AT4G17560 223 / 9e-74 Ribosomal protein L19 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086800 [exp] 183 / 1e-56 AT4G11630 204 / 4e-66 Ribosomal protein L19 family protein (.1) Potri.001G152200 [exp] 82 / 6e-18 AT4G17560 177 / 1e-55 Ribosomal protein L19 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01245 [flax] [poplar] Ribosomal_L19 Ribosomal protein L19
Representative CDS sequence Show only first row Show all	>Lus10017958 pacid=23147952 polypeptide=Lus10017958 locus=Lus10017958.g ID=Lus10017958.BGIv1.0 annot-version=v1.0 ATGCGGTCTCTTTTCGGCGCACTGATTGGAAGGCATAAGATCAGCTGCTCGAGTACTTCCCGCTGGCAGTCAACCGCAACTTCCGTCGCTAACTTCTGCA ATGAAAATCTTCTTTCCCGTTCATCGCCTCCGAACAATCTCTTCCTCCAGTCGTTTCACCATTTCGCTTCCGGATCTCCTCTTCCATCGACCTCAGAAGT TGAAAGAACCAGCTTGACCAGGTTTAGAGGCAACATGATAAGCTCTAATCTTAATCGTCTTGGGACTTATTTCCCTATTAGGAACATAACAACAGCTGGA GCTCCTGCTGCACCAGCTTCAGAAGATTCTTCGATACCTTCGGATGTTATACCCCCACGAATCAAATTCAAGAGGATGGATAAGATGGCAAGGAACATTA TGCAGATTCTCAATCGAGAAGCAGTAGGGGAAGTGAGGACGCAAAGGGAAATACCTGATATACAGCCCGGTTATATTGTGCAACTCAAAGTGGAAGTGCC TGAAAATAAGAGGCGTCTTTCAACTGTCAAGGGTATCGTTATAGCAAGGCGTAATGCTGGCATAAATTCGACGTTTAGAATAAGAAGACAAGTGGCAGGG GTTGGAGTTGAATCTCTCTTCATGCTGCGAAGAACATGTAGCAATGGTTTGAGGATGACTTGTAGTATCGCAAGCTTCCCATCTAGTGAATTTGATAGTA ACCTGTCTATCGCTGGTTCAATTTGTTATATAGCGTTTTGGATGATAGACTTTTTTGGCAGAACTAGTTCCTCTAGATTCCCCTGTTACTTGATGTCTGA TGAGACTATAATCTTGGTGGCGGTTGGCAGATACTCACCTAACATAAAGGAGGTGAAGGTGTTGGACAAGAAGAAAGTTAGAAGGGCCAAGCTTTACTAT CTGCGAGAGAAGATGAATGCCCTTTCAAAATAG
AA sequence Show only first row Show all	>Lus10017958 pacid=23147952 polypeptide=Lus10017958 locus=Lus10017958.g ID=Lus10017958.BGIv1.0 annot-version=v1.0 MRSLFGALIGRHKISCSSTSRWQSTATSVANFCNENLLSRSSPPNNLFLQSFHHFASGSPLPSTSEVERTSLTRFRGNMISSNLNRLGTYFPIRNITTAG APAAPASEDSSIPSDVIPPRIKFKRMDKMARNIMQILNREAVGEVRTQREIPDIQPGYIVQLKVEVPENKRRLSTVKGIVIARRNAGINSTFRIRRQVAG VGVESLFMLRRTCSNGLRMTCSIASFPSSEFDSNLSIAGSICYIAFWMIDFFGRTSSSRFPCYLMSDETIILVAVGRYSPNIKEVKVLDKKKVRRAKLYY LREKMNALSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11630			Ribosomal protein L19 family p...		Lus10017958 [exp]	0	1
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	3.0	0.8938
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	6.3	0.8983
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	7.1	0.8939
AT3G16080			Zinc-binding ribosomal protein...		Lus10035878 [exp]	8.7	0.8883
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10032381 [exp]	8.9	0.8615
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	11.1	0.8937
AT5G06550			unknown protein		Lus10016202 [exp]	13.5	0.8471
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	14.3	0.8871
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Lus10038663 [exp]	15.2	0.8169
AT1G65030			Transducin/WD40 repeat-like su...		Lus10025803 [exp]	16.7	0.8338

Compare expression of checked genes

Lus10017958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.