Plant FIBer expression Database

Lus10017959 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041949
[exp]
441 / 4e-157 ND /
Lus10043316
[exp]
197 / 8e-59 ND /
Lus10019466
[exp]
191 / 3e-56 ND /
Lus10017953
[exp]
0 / 1 AT1G53430 170 / 5e-48 Leucine-rich repeat transmembrane protein kinase (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G084300
[exp]
121 / 5e-31 ND /
PFAM info
Representative CDS sequence
>Lus10017959 pacid=23147902 polypeptide=Lus10017959 locus=Lus10017959.g ID=Lus10017959.BGIv1.0 annot-version=v1.0
ATGATCAACAGGACAAGATTCAGAAGCTCCGCCATTAGTACCCAACCGGCCAATAATGGGCAATATACCAAATCGGCTGCTCTGCTTCCCACTAACGAGA
TCTGCGACGATAGGTTGGACATGAGGAACTGCAGCGGCAGGCTGACTCAGGAATGGCTCGACGAGGCCAAGCGAATTGTAGCGTCTTCTACGGCTACGTC
TGCTTCCGCCTGCGATTCGTCGGCCAAGATTACCGGAGCGCCCAGGTTCGATTCTGTCAGGATTTCTACGGGGGCTCTTATTTGCAGGAAGGATCCTCTC
TCCCGGTCCGCCAGAAGGAACAGAGCAACCGAAGGGTTCAGTGAAGAGATCCTGAGTCGATCCGCGAGGCACACCCGAACTGGATCGATCGTGTCAAATG
AAGTACCCGATTTCTCTACGTCACCAACATCACAAGTGAACTTGTGGATCGCCAACAACATCGAGCCCACAAATGGGTTATTCTCCGACGACGACAACTC
CCCAGGGAAGCAGAGTACTCTGCCCCAGAGGAGGTCGTCCCGGTTCCAACCTGAACCGAAGCAGGATGTTCCGCAGAGGAGGTTTAAGCAAGGGCCGAAC
ACGGAAGGACGGGTTCTTTCCCCACCGAAGAATCTGGTTGAGTCGGCTCACCGGAGGACCATCTCTAGGTCTACATGTTTGATGGAGAAAATCGCTGCGG
TTGAAGAAGAAGGGCTTGGAGTTGGAGGAGAGCTGCAGGAGAGGGGTGTGAATGGGTTTCTGAAGAAGCAGAGGGCCAAGTTTGGTAATATGATGATGAG
CAAAAAAGCTTGA
AA sequence
>Lus10017959 pacid=23147902 polypeptide=Lus10017959 locus=Lus10017959.g ID=Lus10017959.BGIv1.0 annot-version=v1.0
MINRTRFRSSAISTQPANNGQYTKSAALLPTNEICDDRLDMRNCSGRLTQEWLDEAKRIVASSTATSASACDSSAKITGAPRFDSVRISTGALICRKDPL
SRSARRNRATEGFSEEILSRSARHTRTGSIVSNEVPDFSTSPTSQVNLWIANNIEPTNGLFSDDDNSPGKQSTLPQRRSSRFQPEPKQDVPQRRFKQGPN
TEGRVLSPPKNLVESAHRRTISRSTCLMEKIAAVEEEGLGVGGELQERGVNGFLKKQRAKFGNMMMSKKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10017959
[exp]
0 1
Lus10009411
[exp]
1.0 0.9988
AT5G52390 PAR1 protein (.1) Lus10018204
[exp]
8.8 0.9526
AT1G29970 RPL18AA 60S ribosomal protein L18A-1 (... Lus10026180
[exp]
12.5 0.9155
AT4G33860 Glycosyl hydrolase family 10 p... Lus10033787
[exp]
14.4 0.9045
AT2G02850 ARPN plantacyanin (.1) Lus10041848
[exp]
15.1 0.8433
AT4G35220 Cyclase family protein (.1) Lus10027872
[exp]
17.3 0.8994
AT4G39670 Glycolipid transfer protein (G... Lus10035024
[exp]
18.0 0.8504
AT5G06720 ATPA2 peroxidase 2 (.1) Lus10027988
[exp]
19.0 0.8982
Lus10013255
[exp]
20.5 0.8982
AT3G45280 ATSYP72, SYP72 syntaxin of plants 72 (.1) Lus10036118
[exp]
20.9 0.7517

Lus10017959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.