Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24730 96 / 5e-25 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4) AT5G50200 89 / 3e-22 WR3, ATNRT3.1, NRT3.1 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041950 [exp] 247 / 2e-84 AT5G50200 206 / 2e-67 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G089300 [exp] 135 / 2e-40 AT4G24730 177 / 6e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4) Potri.015G085000 [exp] 132 / 3e-39 AT5G50200 184 / 5e-59 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) Potri.015G085100 [exp] 130 / 2e-38 AT5G50200 182 / 3e-58 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017960 pacid=23147873 polypeptide=Lus10017960 locus=Lus10017960.g ID=Lus10017960.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCGACGGCGGCGTGTCCAGTCCTCCTCCGCTTGGCTTCAACCGTTGTTGTATTCTCTTGCTTGGTTTCCTTCTCCGACGCCAATGAGCTCT TCTCCACTCTCCAGAAGAGCCTCTTCGTCACTGCCTCCCCTGCTTCCGGCCAAGTTTTGAAGGGAGGAGAGGACAAGATCAAGGTGACGTGGGGATTCAA CAAGACCTCGCTGGCGGCGGCGGCTGACGGCGACAGCAAGTTCAAGAACATCAAAGTAAAGCTCTGCTACGCGCCGGTGAGCCAGAAGGACAGGCCGTGG AGGAAGACAGAGGACCACTTAAACAAGGACAAGACCTGCCAGTTCAAAATCGTGGCCCGGCCTTATGCAGCCGACGGGAACCAGATGTTTCAGTGTTTTC TCGGTCGTGTCGCTGTTTGGATTCTTCTACAACGAGAAGCGCAAGGGGAAGTCGGCCAAGTGAGGAATATAAGAAGATGCGGCTAA
AA sequence Show only first row Show all	>Lus10017960 pacid=23147873 polypeptide=Lus10017960 locus=Lus10017960.g ID=Lus10017960.BGIv1.0 annot-version=v1.0 MAAPTAACPVLLRLASTVVVFSCLVSFSDANELFSTLQKSLFVTASPASGQVLKGGEDKIKVTWGFNKTSLAAAADGDSKFKNIKVKLCYAPVSQKDRPW RKTEDHLNKDKTCQFKIVARPYAADGNQMFQCFLGRVAVWILLQREAQGEVGQVRNIRRCG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24730			Calcineurin-like metallo-phosp...		Lus10017960 [exp]	0	1
					Lus10039865 [exp]	4.5	0.9090
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10033555 [exp]	6.3	0.8975
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	8.4	0.9294
AT5G06490			RING/U-box superfamily protein...		Lus10008972 [exp]	11.0	0.9236
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	13.7	0.9121
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	17.6	0.9228
AT2G39130			Transmembrane amino acid trans...		Lus10038702 [exp]	19.9	0.8885
AT5G49040			Disease resistance-responsive ...		Lus10021082 [exp]	21.6	0.9082
AT5G05340			Peroxidase superfamily protein...		Lus10006535 [exp]	22.3	0.8645
AT1G52140			unknown protein		Lus10005478 [exp]	24.7	0.8905

Compare expression of checked genes

Lus10017960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.