Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48280 457 / 3e-157 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48270 449 / 2e-154 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48310 445 / 1e-152 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48290 434 / 1e-148 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48320 429 / 2e-146 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT4G13310 416 / 3e-141 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G48300 412 / 5e-140 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT4G13290 403 / 3e-136 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT2G30770 388 / 3e-130 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT1G13080 387 / 6e-130 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041951 [exp] 852 / 0 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 574 / 0 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 567 / 0 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030924 [exp] 408 / 1e-137 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10029035 [exp] 405 / 2e-136 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10034230 [exp] 405 / 3e-136 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 399 / 4e-134 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10033173 [exp] 393 / 7e-132 AT4G31500 462 / 3e-159 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10042815 [exp] 393 / 1e-131 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085800 [exp] 595 / 0 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G090000 [exp] 457 / 4e-157 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G086000 [exp] 455 / 3e-156 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G089900 [exp] 452 / 5e-155 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.016G137600 [exp] 430 / 2e-146 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G025800 [exp] 413 / 1e-139 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 412 / 3e-139 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 405 / 6e-137 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.008G223500 [exp] 402 / 1e-135 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.002G025425 [exp] 395 / 9e-133 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017961 pacid=23147916 polypeptide=Lus10017961 locus=Lus10017961.g ID=Lus10017961.BGIv1.0 annot-version=v1.0 ATGACAGACCAACCTCTAATCCTCCCGCAAGAACTCTCCATCTCTAATCCTCTGCATCTCCTCCTTCTCCTTATCCTCCCACTACTCATCATCATCACCA AATGGCTCTTCAAATCCTCCAAATCAACCACCAAAAACCTCCCACCATCTCCACCAAAGCTCCCAATCCTCGGAAACCTCCATCAACTAGGCACCCATCC ACACCGCACCCTCCAATCCTTGGCCCAAAAACACGGCCCGGTCATGCTCCTCCATCTCGGATCCTCCCCGACTCTAGTCGTTTCCTCGTCTGATTCGGCT CGAGAAATCATGAAGACCCACGACTTGCTCTTCGCGAACCGGCCTTACTCGAGCATCCAGAACCGCCTCCTCTACAACTACAAGGACCTCTCCCAGGCTC CCTACGGGGAGTATTGGAGGCAGATGCGCAGCATCTGCGTCCTCCGACTTCTCAGCCCGAAACGTGTCGAATCGTTTCGGCCAATCAGGGAGCAAGAGGC CCAACTTCTAGTCAAAAAAATTGAGGACTTAGCGGAAACGAAAACGACGTCGTTGTGTGGGTTCGACTTGGGGGAGATGTTGGCTGCGGTGACGACCGAC GTCGTTTGCAGGGTCGCGTTCGGGAGGAAGTATGGAGAAGGGGAGAAGGGGAAGGAGTTTAAGAAGCTGTTGGAGGATTTTGGTGCGGCTTTGGGGACTG TGAATGTGGCCGATTTTATTCCGTGGCTCGGTTGGATTAACCGGTTTAACGGGGTTAATGAGATGGTTGAGAGGGTGTTTTGGGGATTTGATAAGTTTTT GGATGAAGTTGTGGAGGATCATAAGGGTAGGATTGGATTAGTTGAAGGGAAGAGTGAAGAAGAGATGGATTTGGTTGATGTTCTGCTTCGGATACAGAGG GAGTCGACCACTGATTCCGCCATTGATGGCGACACCGTCAAAGCAATCGTTCTGGACATGTTTGCGGCAGGATCGGACACGTCATACACGGCGCTGGAAT GGACAATGACGGAAATCCTGAAGAACCCAAAAGTACTGAAGAAGCTTCAGGAGGAAATCCGAACCATTACAGGGAACGAACGGAACGTCAATGAGGACGA CATCAAGCAAATGCCATACCTGAAAGCTGTCCTGAAGGAGTCCTTTAGACTACACTCACCGATCCCGCTCCTGGTGCCGCGAGAATCGACCCAGAACGTG ACGGTACAAGGGTACGATGTTCCGGCCAGGACGAGGGTGATCATCAACGCGTGGGCGATTGCTAGGGATCCAAAGAACTGGGATGAACCAGAGCAGTTTC GACCGGAGAGGTTTCTGGATAGCACGATTGATTACAAGGGTCAAGATTTCGAGCTGATTCCGTTCGGAGCAGGGAGGAGAGGGTGCCCCGGGGTTAGTTT TGCTACCGCGTCGATTGAGATCACGTTGGCTAGCTTGTTGCACAGGTTTGATTGGTCGTTGCCTGGCGGGAAGAAGGCGGAGGATTTGGATGCGGACGAA GCTCCTGGATTGGCGGTTCATCGGAAGACACATTTGGTTGTCGTTGCTACACCGTGGGTTCCGTAG
AA sequence Show only first row Show all	>Lus10017961 pacid=23147916 polypeptide=Lus10017961 locus=Lus10017961.g ID=Lus10017961.BGIv1.0 annot-version=v1.0 MTDQPLILPQELSISNPLHLLLLLILPLLIIITKWLFKSSKSTTKNLPPSPPKLPILGNLHQLGTHPHRTLQSLAQKHGPVMLLHLGSSPTLVVSSSDSA REIMKTHDLLFANRPYSSIQNRLLYNYKDLSQAPYGEYWRQMRSICVLRLLSPKRVESFRPIREQEAQLLVKKIEDLAETKTTSLCGFDLGEMLAAVTTD VVCRVAFGRKYGEGEKGKEFKKLLEDFGAALGTVNVADFIPWLGWINRFNGVNEMVERVFWGFDKFLDEVVEDHKGRIGLVEGKSEEEMDLVDVLLRIQR ESTTDSAIDGDTVKAIVLDMFAAGSDTSYTALEWTMTEILKNPKVLKKLQEEIRTITGNERNVNEDDIKQMPYLKAVLKESFRLHSPIPLLVPRESTQNV TVQGYDVPARTRVIINAWAIARDPKNWDEPEQFRPERFLDSTIDYKGQDFELIPFGAGRRGCPGVSFATASIEITLASLLHRFDWSLPGGKKAEDLDADE APGLAVHRKTHLVVVATPWVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10017961 [exp]	0	1
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	3.2	0.9071
AT5G57345			unknown protein		Lus10001438 [exp]	4.7	0.9185
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	4.9	0.8856
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	5.3	0.9036
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10019017 [exp]	8.1	0.8705
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	9.0	0.8850
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	9.5	0.8875
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10018372 [exp]	11.2	0.8353
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10003157 [exp]	11.5	0.9049
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	11.5	0.8890

Compare expression of checked genes

Lus10017961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.