Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24770 250 / 5e-82 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 248 / 2e-81 CP31B chloroplast RNA-binding protein 31B (.1) AT2G37220 165 / 2e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52380 135 / 3e-37 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G60000 127 / 6e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52150 100 / 5e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 97 / 5e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G01080 92 / 2e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G53460 91 / 6e-21 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT2G18510 86 / 5e-19 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041952 [exp] 403 / 6e-142 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10002222 [exp] 174 / 2e-52 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 172 / 5e-52 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 166 / 9e-50 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 165 / 7e-47 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10029372 [exp] 134 / 4e-37 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023723 [exp] 132 / 4e-36 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10016174 [exp] 130 / 2e-35 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10035678 [exp] 103 / 1e-25 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090200 [exp] 263 / 3e-87 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 252 / 2e-83 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 253 / 3e-83 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.016G090700 [exp] 168 / 2e-50 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 159 / 9e-47 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 136 / 3e-38 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 135 / 6e-38 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G202000 [exp] 129 / 3e-35 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 128 / 7e-35 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.014G105800 [exp] 104 / 4e-26 AT1G01080 271 / 7e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017962 pacid=23147976 polypeptide=Lus10017962 locus=Lus10017962.g ID=Lus10017962.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCTTCAACCTTCACCAACGCTGCATCCATGGCGGAATCTTGCTTCCTCTCTTCCCTTTCCCTCTTCACCACTCCCAGAACCCCTCTCCTCT CTCTTTCAATCCCGTCTCGTCCCCTCAAGCTCAATCTCCTCTCCCACTCCCTCTCTCTCAAACCCACCACAATAACCAAATTCGCATCTCTCATACCCTT CGTTTCCCAGACCTCCGATTGGGCCCAGCAGGACGAACAAACCGCCTCCGTGGCCGACGAGGAGGAGGACACGCCGGCCGCTGAGGAGTCTTATGACGAG GAGGAAGACGATGAAGATGATGGGTTTTTCCCGCAGGTGCCGTCGGAGGATGCTAAGGTGTTCGTCGGAGGATTACCTTTCGATGTTGACAGTGAGAAGC TGGCTATGCTGTTCGAGCAAGCTGGAACCGTTGAGATTGCTGAGGTGATTTACAACAGGGAGACTGATTCCAGTAGAGGTTTTGGGTTCGTGACCATGAG CAGTGTTGAAGAAGCTGAGAAGGCTATCCAAATGTTCAACCGTTATGAGATCGAAGGGAGAACGTTGACTGTAAACAAAGCTGCAGCCAGAGGAACAAGG CCAGAACGAGTGAATCGCCCTACCGAAAATGCCTACACAGTGTACGTGGGGAACGTCCCGTGGAGTGTCGACGATGCTCGTCTCATGGAAGTGTTTAGCG AGCACGGCAAAGTCACAAACGCACGAGTAGTTTACGACAGGGAGAGTGGCCGATCCCGCGGTTTCGCGTTCGTGACCATGGCCAGCGAGGCTGAGATGAA CGACGTTGTTGCTGCTATGGATGGACAGGTATTTTTCGACTTTCCGCAGTGTATAAAAATTAGTACCAGGGAATGTTGGTAG
AA sequence Show only first row Show all	>Lus10017962 pacid=23147976 polypeptide=Lus10017962 locus=Lus10017962.g ID=Lus10017962.BGIv1.0 annot-version=v1.0 MAASSTFTNAASMAESCFLSSLSLFTTPRTPLLSLSIPSRPLKLNLLSHSLSLKPTTITKFASLIPFVSQTSDWAQQDEQTASVADEEEDTPAAEESYDE EEDDEDDGFFPQVPSEDAKVFVGGLPFDVDSEKLAMLFEQAGTVEIAEVIYNRETDSSRGFGFVTMSSVEEAEKAIQMFNRYEIEGRTLTVNKAAARGTR PERVNRPTENAYTVYVGNVPWSVDDARLMEVFSEHGKVTNARVVYDRESGRSRGFAFVTMASEAEMNDVVAAMDGQVFFDFPQCIKISTRECW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	0	1
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	2.0	0.8917
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	2.4	0.8970
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	3.3	0.9207
AT1G11430			plastid developmental protein ...		Lus10007615 [exp]	3.5	0.8867
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	7.7	0.8886
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	8.0	0.8725
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	8.7	0.9181
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	10.0	0.8695
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	10.2	0.8776
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	10.4	0.8613

Compare expression of checked genes

Lus10017962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.