Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31880 740 / 0 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT5G62710 253 / 9e-76 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 248 / 7e-71 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 248 / 9e-71 Leucine-rich repeat protein kinase family protein (.1) AT5G49660 245 / 2e-70 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G09970 243 / 1e-69 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G31420 236 / 1e-69 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G23950 237 / 2e-69 Leucine-rich repeat protein kinase family protein (.1) AT4G28650 235 / 1e-66 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 235 / 1e-66 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041953 [exp] 1157 / 0 AT2G31880 741 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10013675 [exp] 866 / 0 AT2G31880 781 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033041 [exp] 864 / 0 AT2G31880 783 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 251 / 3e-75 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 249 / 9e-74 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 247 / 2e-73 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018636 [exp] 253 / 8e-73 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10019963 [exp] 246 / 2e-72 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 252 / 3e-72 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090500 [exp] 803 / 0 AT2G31880 784 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.015G086800 [exp] 795 / 0 AT2G31880 804 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 249 / 3e-74 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G058100 [exp] 251 / 3e-72 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 251 / 3e-72 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.002G256500 [exp] 248 / 3e-71 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G111700 [exp] 246 / 2e-70 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G063300 [exp] 242 / 5e-69 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G163300 [exp] 229 / 6e-69 AT5G13290 484 / 3e-171 SUPPRESSOR OF LLP1 2, CORYNE, Protein kinase superfamily protein (.1.2.3) Potri.009G081800 [exp] 240 / 1e-68 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10017963 pacid=23147893 polypeptide=Lus10017963 locus=Lus10017963.g ID=Lus10017963.BGIv1.0 annot-version=v1.0 ATGTCCGTCTCCCACAAACCACTCCTCCTCCTCCTCCTCCTCATCATCATCTCCCTTCTCCTCGACGTCCACGCCCGCCTCCACCTCAACCCGTCAGATC ACCGCGCCATCTCCGCCGTCCGCCGCAACCTCGGATTCAACCCTGTCGTCGTCTCTCCCTGCACTCTCCCCGGCGTCTTCTGCCAGCGCCGCGGCCTCTC CTCCACCGGTTACGAGCTTAGAGTCACCAGGATAGTCTTCAACACCCAATCCCTCTCCGGAACTCTATCTTCCGAAATCGGCCGTCTTTCGGAGCTCAAA GAGCTTTCCCTGCGTAACAACCGCGTCGTTGACCGAATCCCTCCCGAATTAGTCCACTGCAACAAACTGGAGACTCTCGACCTCGCCAACAACCAATTCT CCGGCGATGTCCCTTCCGGCCTCTCGACGTTAGTCAGGCTCCGATTCTTAAACCTCTCTTCCAACAATTTCTCCGGCGATTTGAGCTTCCTGCAGCATTT CCCCAATTTGGAAACCCTATCCATCTCCGACAATTTCTTCACAGGTCAGATTCCAAATTCGATTCGGTCGTTTCGTAATCTACGCTCCTTCGAAATCTCC GGCAATCGATTAACGAGATTAGAAATCGAATCCTCCGAGTATCCGAAACGTTACAAATTCGCGGAGGAATTAGAATTAGAATCAGTTTCCGGTCCAATAT CCTCCGTGGAAGCTCCGCAACCATCGTTCCCTGTGGATTTGAACTACGAGAATGACGAGACGAAGAAGAAGAAGAAGCAGAAGCTAGCTGATTGGCTGCT GGGATTTCTCGCCGGAGCAATGGCGGGGAGTATATCTGGATTTGTATTCTGCGTCATGTTCAGGTTAGTCTTAGCGGCGGTGAGAGGCGGAGGTAAAGAT TCAGGTCCAGCAATATTCAGTCCAATGATTAAGAATCCGGCCGATCTAGCTTTCCTAGAGAAAGAAGACGCTGCAGCTAGTTTAGAAATCATCGGCAAAG GTGGCTGCGGAGAAGTTTACAAAGCACAGTTGCCTGGAAGCAACGGCAAAATGATCGCAATCAAGAAGATTGTTCAGAACCCTAAAGAATCGACAGAGCA AGCAGAGCAAAAAGACTCCAAGAAGATGAGACAGATCGAGTCAGAGATCAACACGGTAAGCCAAATTCGCCATAGGAACCTTCTGCCGTTGCTTGCACAC GTCACTCGTCCAGACTGCCATTACTTGGTGTACGAGTTCATGAACAACGGCAGTTTACAGAACATGCTGGTGGATGTTTCGAAAGGGAAGACTGAGTTGG ATTGGCCTGCAAGGTACAAGATTGCAGTAGGGATAGCGGCAGGGTTGGAGTATCTTCACATAAATCACAGCCCACGTATAATCCATAGAGATCTGAAGCC CGGGAATGTACTACTGGACGACGATATGGAGCCTCGAATCACCGATTTCGGGCTGGCAAAATCGATGCCTGATGCGCATACCCACATTACGAGCTCGAAT GTGGCAGGGACGGTGGGGTACATAGCGCCAGAGTATCATCAGACGTTGAAGTTCACTGATAAATGTGATATCTATAGCTTCGGGGTGTTGCTTGGGGTGA TGTTGATCGGTAAGCTTCCGTCGGATGAGTTCTTTCAGCATACCAGAGAGATGAGCTTGGTGAAATGGATGAAGAACGTAATGACGTCTGATGATCCGGG AAGGGCGATTGATCCGAAGCTGTTGGGGAAAGGGTATGATGAACAGATGCTGCTGGTGCTGAAAATTGCTTGCTTTTGCACCATTGAAGATCCTAAACAG AGGCCTAATAGTAAGGATGTTAGAGCCATGTTAGCTCAGATCAAACACTAA
AA sequence Show only first row Show all	>Lus10017963 pacid=23147893 polypeptide=Lus10017963 locus=Lus10017963.g ID=Lus10017963.BGIv1.0 annot-version=v1.0 MSVSHKPLLLLLLLIIISLLLDVHARLHLNPSDHRAISAVRRNLGFNPVVVSPCTLPGVFCQRRGLSSTGYELRVTRIVFNTQSLSGTLSSEIGRLSELK ELSLRNNRVVDRIPPELVHCNKLETLDLANNQFSGDVPSGLSTLVRLRFLNLSSNNFSGDLSFLQHFPNLETLSISDNFFTGQIPNSIRSFRNLRSFEIS GNRLTRLEIESSEYPKRYKFAEELELESVSGPISSVEAPQPSFPVDLNYENDETKKKKKQKLADWLLGFLAGAMAGSISGFVFCVMFRLVLAAVRGGGKD SGPAIFSPMIKNPADLAFLEKEDAAASLEIIGKGGCGEVYKAQLPGSNGKMIAIKKIVQNPKESTEQAEQKDSKKMRQIESEINTVSQIRHRNLLPLLAH VTRPDCHYLVYEFMNNGSLQNMLVDVSKGKTELDWPARYKIAVGIAAGLEYLHINHSPRIIHRDLKPGNVLLDDDMEPRITDFGLAKSMPDAHTHITSSN VAGTVGYIAPEYHQTLKFTDKCDIYSFGVLLGVMLIGKLPSDEFFQHTREMSLVKWMKNVMTSDDPGRAIDPKLLGKGYDEQMLLVLKIACFCTIEDPKQ RPNSKDVRAMLAQIKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	0	1
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	1.4	0.8946
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	2.8	0.8751
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	3.2	0.9038
AT5G44860			unknown protein		Lus10036220 [exp]	4.0	0.8880
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	4.9	0.8681
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	6.7	0.8839
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	7.1	0.8940
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	8.9	0.8715
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	9.5	0.8722
AT3G57450			unknown protein		Lus10018070 [exp]	11.3	0.8263

Compare expression of checked genes

Lus10017963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.