Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21340 604 / 0 MATE efflux family protein (.1.2) AT4G39030 576 / 0 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1) AT2G38330 86 / 1e-17 MATE efflux family protein (.1) AT4G38380 61 / 1e-09 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041955 [exp] 934 / 0 AT2G21340 598 / 0.0 MATE efflux family protein (.1.2) Lus10018080 [exp] 614 / 0 AT2G21340 667 / 0.0 MATE efflux family protein (.1.2) Lus10042074 [exp] 551 / 0 AT2G21340 603 / 0.0 MATE efflux family protein (.1.2) Lus10017498 [exp] 543 / 0 AT2G21340 610 / 0.0 MATE efflux family protein (.1.2) Lus10014440 [exp] 68 / 1e-11 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 67 / 1e-11 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 66 / 4e-11 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10012227 [exp] 62 / 5e-10 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 57 / 2e-08 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122600 [exp] 710 / 0 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.009G122900 [exp] 632 / 0 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 67 / 2e-11 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.005G102800 [exp] 59 / 5e-09 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 57 / 2e-08 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 50 / 3e-06 AT4G38380 604 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10017964 pacid=23148003 polypeptide=Lus10017964 locus=Lus10017964.g ID=Lus10017964.BGIv1.0 annot-version=v1.0 ATGCAAATCCAGGGCTTGCTTCATTCTTCCTCTTCCATCCAAAACCTAATATTTCCTCCCAAAGTTCCAATCTTTCGCAAGAACCCATGCCGGATTTCAC TTCCCAGGATCTTGGAATTGCAACAACCCTCTTCCCCTCCTCCTCCAAGCATTTTGAAATCCTCCAGACTTGTGAAATGCTGCTGCATTACCCCAGCTCA GGAATTCGACAGTGTCAATGCACCTGATGAAGTGGTTGCAGAGGGAGTTGGATTGGAGGGGCAGAGCTTGTGGGAGCAAATGAAGGAGATTGTGAAGTTT ACAGGGCCAGCTGCTGGGTTATGGCTATGTTCGCCATTGATGAGCCTCATTGACACTGTAGTCATTGCCCAAGGGAGCTCTCTTGAGCTTGCTGCTTTGG GTCCCGGGACAGTGTTATGCGACAATATGAGCTATGTGTTTATGTTTCTCTCCATTGCTACTTCAAACATGGTTGCGACTTCCCTTGCCAAAGAGGATAA AGAAGAAGTGCAATATCAGCTGTCAGTGTTACTCTTCATTGGCTTGACTTGTGGCATCATGATGTTTCTGTTCACCAAGTTGTTTGGGCCAACTGTTTTA GCAGCTTTTGCCGGGTCGAATAATTCGCACATTGTACCTGCAGCAAACACTTATGTCCAGATCCGAGGCTTGGCATGGCCAGTGATTCTTATTGGATGGG TTGCTCAAAGTGCAAGCCTCGGGATGAAGGATTCTTTAGGGCCATTGAAGGCGTTGATAGCTGCCACTGCTGTGAATGGAATCGGTGATGTAGTTCTATG CAGAGTTCTTGGATTTGGCATAGCTGGTGCAGCATGGGCAACACTTGCTTCACAAGTTGTTGCAGCTTGCATGATGATGGATTCACTGAACAAAAAGGGG TATAATGCATACGCGATCTCTGTTCCAACGACTGATGACCTCGTCAAAATATTCGGGCTTGCTGCTCCGGTCTTCGTAATGATGATCTCTAAGGTGGCTT TCTTCTCACTCCTTGTGTATTGCACTACATCAATGAGCACACTTACTGTGGCTGCTCATCAGGTTGTGATTCAAGTGTTCATGATGGGGACAGTATGGGG AGAACCCCTCTGTCAAACTGCTCAGACCTTCATGCCCGAGCTGCTCTACGGAATGAAGCAAAGTCTTGCGAGGGCTAGGATGCTGCTTAAATCCCTCATG ATCACCGGAACAATCCTCGGACTCGGACTGGCAATTCTGGGAACATCTGTTCTTTGGTTCTTCCCCACTCTCTTCACCCCAGATCTTGAGATAATTAGAG AGATGCACAGAATTCTGATTCCCTATTTTCTTGCACTGTCCGTGACGCCTTGCAGTCTCACCCTTGAAGGGACATTGCTGGCTGGAAGGGATCTAAGATT CATTAGCCTATCCATGAGCGGGTGCTTTACGCTGGGTGCATTGGCACTATTGATTGTTAGCAGCAGAGGCTACGGCTTGCCAGGCTGTTGGTTCGTGATG GTGGGATTCCAATGGGCTCGATTCTTGCTAGCACTCCAGCGGCTTCTTTCTCCAAGTGGCATGCTTTTCCCTCAGGATTTAAGCCCCCACAAGTTAAAAG CTGCTTAA
AA sequence Show only first row Show all	>Lus10017964 pacid=23148003 polypeptide=Lus10017964 locus=Lus10017964.g ID=Lus10017964.BGIv1.0 annot-version=v1.0 MQIQGLLHSSSSIQNLIFPPKVPIFRKNPCRISLPRILELQQPSSPPPPSILKSSRLVKCCCITPAQEFDSVNAPDEVVAEGVGLEGQSLWEQMKEIVKF TGPAAGLWLCSPLMSLIDTVVIAQGSSLELAALGPGTVLCDNMSYVFMFLSIATSNMVATSLAKEDKEEVQYQLSVLLFIGLTCGIMMFLFTKLFGPTVL AAFAGSNNSHIVPAANTYVQIRGLAWPVILIGWVAQSASLGMKDSLGPLKALIAATAVNGIGDVVLCRVLGFGIAGAAWATLASQVVAACMMMDSLNKKG YNAYAISVPTTDDLVKIFGLAAPVFVMMISKVAFFSLLVYCTTSMSTLTVAAHQVVIQVFMMGTVWGEPLCQTAQTFMPELLYGMKQSLARARMLLKSLM ITGTILGLGLAILGTSVLWFFPTLFTPDLEIIREMHRILIPYFLALSVTPCSLTLEGTLLAGRDLRFISLSMSGCFTLGALALLIVSSRGYGLPGCWFVM VGFQWARFLLALQRLLSPSGMLFPQDLSPHKLKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	1.0	0.9594
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	2.8	0.9250
AT4G13150			unknown protein		Lus10038175 [exp]	4.0	0.8928
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	4.2	0.8905
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	5.3	0.8976
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	5.3	0.8945
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	6.7	0.8737
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	8.0	0.8425
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	8.8	0.8880
AT5G08720			unknown protein		Lus10025701 [exp]	9.5	0.9013

Compare expression of checked genes

Lus10017964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.