Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21350 140 / 2e-40 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G39040 132 / 1e-36 RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G20020 45 / 5e-05 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028787 [exp] 162 / 8e-48 AT4G39040 124 / 8e-34 RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10011119 [exp] 49 / 2e-06 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 49 / 2e-06 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 44 / 9e-05 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10009671 [exp] 43 / 0.0002 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009031 [exp] 42 / 0.0005 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 42 / 0.0006 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10012974 [exp] 42 / 0.0006 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122500 [exp] 184 / 2e-56 AT2G21350 160 / 2e-48 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 46 / 2e-05 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 45 / 5e-05 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10017965 pacid=23147887 polypeptide=Lus10017965 locus=Lus10017965.g ID=Lus10017965.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGATTACCTCATCCTTCCTTCAGCCACTCCTCCACGCAGAACTCAGGAAGCTACCGTCTACCTCCTTCTTTTTCCGTCCAATTCGCACAG CTGCCGCCAGCCGGAGCACAAAATCCGGCTTCTCTCATCCACATTTCAAGATATACCCCATTGGTAGCAGCACCGCATCTCCTCTCTTCTCCTTTGCTCC TCAAACCGCAGCTTCGCACTCTCTGGCTCTAGAGGAAGAAGAAGAAGAAGACGGCGAATTTGAAGGCGACGAGGTAGAGGAAAGTGAGGAGGAATTCGGC TATGAAATCGAGGATGAAGATGAAGATGAAGAAGGAGAAGAAGAAGAAGGAGAAGGGGAAGGAGAAGGCGAGAGGTTAGCTGTTATGGAGAAGGAAGAGT CGAAGAATAGAACTGTAGTAGCGGCAAAATTGCCGGATTTAACAGTTAAGGAGAAGAAAGAGTTAGCTTCTTACGCCCACGGATTAGGGAAGAAACTCAA GAGTCAGCTAGTAGGCAAGTCTGGCGTCACGGAAAATGTCGCCACTTCTTTCATAGAGACCCTTGAAGCCAATGAACTCCTCAAGATTAAAATACACGGG ACATGTCCGGGCGAGCTAGATGAAGTGGTGCAGCAACTGCAGAAACTAACCGGCTCGATCGTGGTTAGTAAAATTGGTCGGACTGTAATCATATACAGGC CAAGCATCAGTAAAATGAAGGCAGAGGAAAAGAGGAGGGTGGAACGTAAAATGTTTGTCAGACAACAGAACAAACCAAGATTCAGGCCAGCAGTTCTTGC CGAGCGCGAACCGAGGACGAATGGACGTGGACGCCGAGGCAATAGTAGATTTAATAAGGGGACCATGGATGCTTCAGAAAGAAGGTGA
AA sequence Show only first row Show all	>Lus10017965 pacid=23147887 polypeptide=Lus10017965 locus=Lus10017965.g ID=Lus10017965.BGIv1.0 annot-version=v1.0 MAAAITSSFLQPLLHAELRKLPSTSFFFRPIRTAAASRSTKSGFSHPHFKIYPIGSSTASPLFSFAPQTAASHSLALEEEEEEDGEFEGDEVEESEEEFG YEIEDEDEDEEGEEEEGEGEGEGERLAVMEKEESKNRTVVAAKLPDLTVKEKKELASYAHGLGKKLKSQLVGKSGVTENVATSFIETLEANELLKIKIHG TCPGELDEVVQQLQKLTGSIVVSKIGRTVIIYRPSISKMKAEEKRRVERKMFVRQQNKPRFRPAVLAEREPRTNGRGRRGNSRFNKGTMDASERR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21350			RNA-binding CRS1 / YhbY (CRM) ...		Lus10017965 [exp]	0	1
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	1.0	0.9370
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	3.2	0.9207
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025234 [exp]	4.5	0.8808
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	10.5	0.9123
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	13.4	0.9107
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	13.7	0.8832
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	14.1	0.9064
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	14.7	0.9087
AT2G43945			unknown protein		Lus10026850 [exp]	15.1	0.7979
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10020797 [exp]	16.1	0.8897

Compare expression of checked genes

Lus10017965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.