Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21370 534 / 0 XK1, XK-1 XYLULOSE KINASE 1, xylulose kinase-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041956 [exp] 694 / 0 AT2G21370 666 / 0.0 XYLULOSE KINASE 1, xylulose kinase-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122300 [exp] 573 / 0 AT2G21370 633 / 0.0 XYLULOSE KINASE 1, xylulose kinase-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00370 [flax] [poplar] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [flax] [poplar] Actin_ATPase PF02782 [flax] [poplar] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017967 pacid=23147901 polypeptide=Lus10017967 locus=Lus10017967.g ID=Lus10017967.BGIv1.0 annot-version=v1.0 ATGCTGTCTAGGAAGAATGAAGAAGAGACAGTGGATTGGGTACGTTCATGGAGAACGACTCTCTTCTCACTGCTAAAAGATGTTCCAAGCCATCTCAAGC AACTCATTGCTGCAATTTCCATCGATGGAACATCAGCAACTACAATCATTGTGGATAGAAACACAGGAGAGCCGCTATGGAGGCCGTTCCTATACAACGA GAGCTGTCCTGATGCTCTGCCAGCCATTAGATCGATCGCTCCTGCAAACCATACAGTCTGCTCCGGATCCTCAACATTATGCAAACTTGTTTCTTGGTGG AATATTAACAACAGTTCGTCGAGAAAGAAACCGGCTGCACTGTTATTGCACCAGGCAGATTGGCTTCTGTGGCTCCTCCATGGGAGAGTTGGAGTAACTG ATTATAATAATGCTCTCAAGGTTGGTTATGATCCTGAATCAGAATCCTACCCGCCATGGCTGCTCAATCAGCCATATTCGGAGCTTTTGCCATCTGTTAC AGCTCCTGGAACTTCCATCGGTTGCTTGATAGACGAGATTAGAACTCAATATGGTGAAGAAATCCTTGTGGTACCAGGATTTCCTGGAGATTGTGTTGTA TGCGCAGGTACAACAGATAGCGTAGCCGCCTTTCTTGCAGCTCAAGCAAAAGAGCCTGGTCAAGCAGTTACCTCTCTGGGATCCACGCTTGCTATTAAGC TACTAAGCAACACGAGGATCGAGGACACGAGGTATGGAGTGTACAGCCATCGCCTGGATGACAAATGGCTGGTCGGAGGTGCATCAAACACGGGAGGGGC GGTCCTTAGAACACTGTTTACTGATGAGCAGTTGGAGACATTAAGTGAACGTATAGATCCAGCGCAACCTTCTGGTCTCGATTACTACCCGCTCAAGGCC AATGGCGAGAGGTTCCCCGTGGCCGATCCTGACATGGCTCCGAGGCTACATCCAAGGCCAGAAAGTGATGTTGAGTATCTACATGGCGTCCTCGAATCCA TTGCGCGAATCGAGGGCAAGGCGTATAAGTTGTTGAAAGAGCTTGGCGCGACCGAAGTTGAACAGGTGTTCACTTCTGGAGGCGGATCCAAGAACAACAA ATGGATGCAGATAAGGGAGAGGGTGATCGGGGTGCCCGTCAGCCGGGCAATCCACACGGAAGCTGCCTATGGAGCTGCACTGTTGGCCTTGAAAGGTACC AAAGGATCATAG
AA sequence Show only first row Show all	>Lus10017967 pacid=23147901 polypeptide=Lus10017967 locus=Lus10017967.g ID=Lus10017967.BGIv1.0 annot-version=v1.0 MLSRKNEEETVDWVRSWRTTLFSLLKDVPSHLKQLIAAISIDGTSATTIIVDRNTGEPLWRPFLYNESCPDALPAIRSIAPANHTVCSGSSTLCKLVSWW NINNSSSRKKPAALLLHQADWLLWLLHGRVGVTDYNNALKVGYDPESESYPPWLLNQPYSELLPSVTAPGTSIGCLIDEIRTQYGEEILVVPGFPGDCVV CAGTTDSVAAFLAAQAKEPGQAVTSLGSTLAIKLLSNTRIEDTRYGVYSHRLDDKWLVGGASNTGGAVLRTLFTDEQLETLSERIDPAQPSGLDYYPLKA NGERFPVADPDMAPRLHPRPESDVEYLHGVLESIARIEGKAYKLLKELGATEVEQVFTSGGGSKNNKWMQIRERVIGVPVSRAIHTEAAYGAALLALKGT KGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	1.0	0.9432
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	1.4	0.9209
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10025202 [exp]	1.7	0.9165
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	5.1	0.8910
AT1G67910			unknown protein		Lus10023630 [exp]	5.7	0.9108
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	6.0	0.8833
AT4G19830			FKBP-like peptidyl-prolyl cis-...		Lus10036206 [exp]	6.1	0.8710
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	6.7	0.9072
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	6.9	0.8933
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	7.9	0.8823

Compare expression of checked genes

Lus10017967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.