Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28560 314 / 7e-104 SRD2 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) AT4G39100 225 / 2e-71 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G22140 209 / 3e-65 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 162 / 2e-47 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G02470 46 / 2e-05 Alfin AL6 alfin-like 6 (.1.2) AT1G14510 44 / 0.0002 Alfin AL7 alfin-like 7 (.1) AT5G20510 43 / 0.0003 Alfin AL5 alfin-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041957 [exp] 592 / 0 AT1G28560 345 / 2e-115 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10041960 [exp] 295 / 8e-99 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017482 [exp] 262 / 8e-86 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10028801 [exp] 260 / 5e-85 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 209 / 4e-65 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020020 [exp] 205 / 1e-63 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143000 [exp] 365 / 1e-122 AT1G28560 361 / 5e-122 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Potri.004G159900 [exp] 258 / 2e-84 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G121000 [exp] 252 / 5e-82 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 211 / 7e-66 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 211 / 7e-66 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G004900 [exp] 210 / 1e-65 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 210 / 1e-65 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 209 / 2e-65 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.010G188100 [exp] 42 / 0.0003 AT5G05610 333 / 6e-117 alfin-like 1 (.1.2) Potri.008G069200 [exp] 42 / 0.0003 AT5G05610 336 / 5e-118 alfin-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF12251 [flax] [poplar] zf-SNAP50_C snRNA-activating protein of 50kDa MW C terminal CL0390 [flax] [poplar] PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10017968 pacid=23148012 polypeptide=Lus10017968 locus=Lus10017968.g ID=Lus10017968.BGIv1.0 annot-version=v1.0 ATGGCGGACCGCCGGCAGTTCCATGGCTCTAAGGAAGTGTTCCTCTCTGACCACTGCGATATTCAGAGCGCCGATACGATCGAAGGGAAATGTACCGTCC ATAGTTTCAAGAGCTACACCAAGCTTGACGCTGTTGGGAATGACGACTTCTTTTGCCGGTTCGAGTATAACTCCTCCACTGGAGCTTTCAATCCGGACAG AGTTGCCGTGTATTGTAAATGCGAGATGCCTTATAATCCTGATGACTTAATGGTGCAATGTGAAGGCTGCAGCGACTGGTTTCATCCTGCTTGTATAGAA ATGACGGTTGAGGAAGCCAAACGATTAGACCACTTCTTCTGCGAGACTTGCTCATCCCAAGTCCAAAAGAACTTGCAGAATTCACATGCTACAGCCACTA CTCCAAGTGAATCAGATGCCAAGGACAGCTACCCTGCAATAGTAGATGAGCTACTGAGCATCAAACAGAAACAGGATGAAGATAGAAGAACAGCTACATT ACATTCCCTCAGTGCTGGGTGCAAAGTCAACAAAGGTTCTAGTGCATCTTCAGAACGTGGCGCGATAATGAAATCTCTGAGATCTGTCAACTCAAATATG CTGCTTGTGAAGACCTCAGATATTACACAAGAAGTACCTGTGCAACTTCCTGAGGTAGTTCTGGTTGTGGAGGTGTACCATAATGTGCATCAATGGCAGA AGACTCAAGAGTTTTCGGTGCTAGGGCGACAAATGTTGACCGAACTGAAGGACAGGATCTATTGCAAGACAGATGAAATAATGAAAAGGGCGGAATTCTA TGACGCTTCAGGATATTTTCTCATCGAGGACTTGTTCCTCAATGATATGAGGGGAAAAAATGCTACAGATTATAGTGAACCGATATTCGACTGGCTTAAC AACTCAAAAGAAGAAGTTTCTAAGAAATGGGAGTACATCATAGGCGGAGACCTAAAGCGCAAGCACAAAGCTCTCGTGGGCGAGATGCCAAACCCTAGTT TACCAGTATTCCGACGTGCTGAGATGCATACCATGCGTTTTTGCGATTTGAAGTTTCAGTTGGGTGCTTCATATCTCTACTGTCATCAGGGGGGTTGCAA GCATACTATAGTGATTCGAGACATGAGGTTGATTCATCCTGACGATGCACAGAATCGAGCTGCTTATCCGATCGAGAGCTTTCGACTGAAAGTGCGCTGG CACAAATGTAGCATATGCAAGATATTTAGAGCGAAGAAGGTGACGGTGGATGACAAATTGGCCAAATATAATCCTTGCTACTTCTGCGATGCTTGTTATT TCCTTCTTCATTACAAAGAGAACAATGAACTCCTGTATCATGATTTCTCTGTATATAACTACATTCATGATTAG
AA sequence Show only first row Show all	>Lus10017968 pacid=23148012 polypeptide=Lus10017968 locus=Lus10017968.g ID=Lus10017968.BGIv1.0 annot-version=v1.0 MADRRQFHGSKEVFLSDHCDIQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIE MTVEEAKRLDHFFCETCSSQVQKNLQNSHATATTPSESDAKDSYPAIVDELLSIKQKQDEDRRTATLHSLSAGCKVNKGSSASSERGAIMKSLRSVNSNM LLVKTSDITQEVPVQLPEVVLVVEVYHNVHQWQKTQEFSVLGRQMLTELKDRIYCKTDEIMKRAEFYDASGYFLIEDLFLNDMRGKNATDYSEPIFDWLN NSKEEVSKKWEYIIGGDLKRKHKALVGEMPNPSLPVFRRAEMHTMRFCDLKFQLGASYLYCHQGGCKHTIVIRDMRLIHPDDAQNRAAYPIESFRLKVRW HKCSICKIFRAKKVTVDDKLAKYNPCYFCDACYFLLHYKENNELLYHDFSVYNYIHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	0	1
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	2.0	0.9333
					Lus10006006 [exp]	2.8	0.9372
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	5.0	0.9152
AT5G66930			unknown protein		Lus10019643 [exp]	5.2	0.9380
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	5.9	0.9255
AT5G53220			unknown protein		Lus10001067 [exp]	6.3	0.9278
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	6.3	0.9079
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	6.9	0.9264
AT3G22430			unknown protein		Lus10041203 [exp]	9.5	0.8906
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	9.8	0.9105

Compare expression of checked genes

Lus10017968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.