Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 74 / 6e-15 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 68 / 9e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 66 / 4e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 66 / 6e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31690 61 / 1e-10 B3 REM9 Transcriptional factor B3 family protein (.1) AT5G18090 58 / 9e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 57 / 3e-09 B3 VDD VERDANDI (.1) AT4G31640 56 / 7e-09 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31680 56 / 7e-09 B3 REM8 Transcriptional factor B3 family protein (.1) AT3G17010 52 / 1e-07 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041961 [exp] 461 / 3e-166 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10008529 [exp] 182 / 1e-56 AT3G18990 87 / 8e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 87 / 7e-20 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 84 / 9e-19 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 82 / 4e-18 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 78 / 6e-16 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 75 / 4e-15 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 74 / 5e-15 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10039303 [exp] 74 / 8e-15 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 79 / 1e-16 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 71 / 7e-14 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 68 / 6e-13 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G057101 [exp] 60 / 1e-10 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 59 / 7e-10 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 57 / 1e-09 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 57 / 3e-09 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 49 / 1e-06 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.018G124501 [exp] 45 / 5e-06 AT3G18990 59 / 3e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 47 / 9e-06 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017970 pacid=23147863 polypeptide=Lus10017970 locus=Lus10017970.g ID=Lus10017970.BGIv1.0 annot-version=v1.0 ATGGGCTCTCGAAATTTCTTCAAGATCATACTTCAATCATCCATTGATGAGAATAAGCTGCATCTGCCAAAGAAATTCCTGAAGAAGCATGGCAACGAGC TCGGAAGAAAAGTGCTTTTCAAAGTTCCGGATGGAAAAACCTGGGAGATCATGGTTCAAAAGACGTGTGACGGAGTCACATGGTTTAGCCAGGGCTGGTC AGCATTCGCAGCCCGCTACTCGATCTGCTACGCCTATCTGTTGGTGTTCAAGTACAAAGGCGATTCCTGCTTCCATGTTCGGATCTACACTCCAAATGCT TGCGAAATCGTTTACCCAGCTGGTGATGATCATAGGCCTCCAAATGTTGCAGTGAGAAATGAAGTTGGGGAGGGATCAGGTTCAGGGTTTAGAATTGAAA CAATAGTTGCTACCAGCTTTAAACAGATCCGCAATAAAGCTACGGGATCAGAGAAGCGGACCATTAATATTGCAATGGAGCTGAGTCTGAAGAATCCGTC ATGGACGCTGGTGATTAAACCGTACAACTTCATACTCCCTGTCGGATACGTTCCCGGCAAATTTGCGAATGCTCATCTGGGACCAGAGTGCAGCTACATG ATAGTGTTCGATTCCCGCGGGAGCAAGGAGTGGGTGATTCGGCTCAACAGGAGGGAACGAGGAGGGCTGAATTTGGGACTTGGGTGGGGAGATTTCAGAG CTGAGAATGATCTGAAGCCGGGGGACGTCTGCCTCTTTGAGCTTGTGAATCCCGGGGAGTTTTTCATGAAATCTCACATCTTCCGCGTTTCGGATCACTG A
AA sequence Show only first row Show all	>Lus10017970 pacid=23147863 polypeptide=Lus10017970 locus=Lus10017970.g ID=Lus10017970.BGIv1.0 annot-version=v1.0 MGSRNFFKIILQSSIDENKLHLPKKFLKKHGNELGRKVLFKVPDGKTWEIMVQKTCDGVTWFSQGWSAFAARYSICYAYLLVFKYKGDSCFHVRIYTPNA CEIVYPAGDDHRPPNVAVRNEVGEGSGSGFRIETIVATSFKQIRNKATGSEKRTINIAMELSLKNPSWTLVIKPYNFILPVGYVPGKFANAHLGPECSYM IVFDSRGSKEWVIRLNRRERGGLNLGLGWGDFRAENDLKPGDVCLFELVNPGEFFMKSHIFRVSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10017970 [exp]	0	1
AT2G34540			unknown protein		Lus10042827 [exp]	4.9	0.7632
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	8.1	0.7573
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	11.8	0.7469
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	12.1	0.7555
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	13.6	0.7507
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10041961 [exp]	14.0	0.7368
AT1G06450			Polynucleotidyl transferase, r...		Lus10017905 [exp]	22.2	0.6919
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	31.1	0.7377
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	35.4	0.6987
AT1G17450			B-block binding subunit of TFI...		Lus10015660 [exp]	36.9	0.6944

Compare expression of checked genes

Lus10017970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.