Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 692 / 0 Major facilitator superfamily protein (.1) AT4G34950 365 / 1e-119 Major facilitator superfamily protein (.1) AT2G16660 340 / 4e-110 Major facilitator superfamily protein (.1) AT5G14120 337 / 1e-108 Major facilitator superfamily protein (.1) AT3G01930 337 / 2e-108 Major facilitator superfamily protein (.1.2) AT5G50520 321 / 5e-103 Major facilitator superfamily protein (.1) AT5G50630 321 / 5e-103 Major facilitator superfamily protein (.1) AT2G28120 251 / 1e-75 Major facilitator superfamily protein (.1) AT2G39210 243 / 1e-72 Major facilitator superfamily protein (.1) AT1G74780 237 / 6e-71 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041962 [exp] 1087 / 0 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 894 / 0 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 886 / 0 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 651 / 0 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 348 / 2e-113 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 343 / 2e-111 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 343 / 9e-111 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035203 [exp] 343 / 1e-110 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 329 / 1e-105 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012300 [exp] 838 / 0 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 813 / 0 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 733 / 0 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 365 / 7e-120 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 354 / 2e-115 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 350 / 2e-113 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 331 / 7e-107 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 326 / 4e-104 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 325 / 8e-104 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G006400 [exp] 248 / 8e-75 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10017971 pacid=23147969 polypeptide=Lus10017971 locus=Lus10017971.g ID=Lus10017971.BGIv1.0 annot-version=v1.0 ATGGGGATGCCGAACATCGTGGTGAAAGGAGGTAGCCGGCCGCCATGGGTGGGATTGGCAGCAGCTGTGTGGGTCGAGGTAGCTGCCGGAAACGGCTACA CATTCCCACTCTACTCCCCGGCGCTCAAATCCGCCATGGGACTCAACCAGCAGCAGATCACAATGCTCGGTGTCGCCAACGATATTGGGGAGAGCGTCGG GTTGCTCCCTGGCATCGCCTGCAACAAGTTCCCTCCTTGGGCTGTTCTCTTCGTCGGCGTCGTCATGTGCTTTTTGGGATACGGCGTCATCTTTCTCACC GTCAGCAACACCGTCGCCGGTCTGCCTTATTGGCTGGTATGGATCGCGCTTGTCATTGGTACAAATAGCAATGCATGGTTTGGCACAGCCGTGCTCGTAA CTAATATGAGAAACTTTCCCCTTAGCAGAGGAACTGTTTCTGGTATACTCAAAGGCTACGTTGGACTCTCTGCTGCAGTATATACGGTGTTATACAACAT GGTGCTTAAGGACTCAGCTTCTGATTTTGTGTTGATGCTCACTCTTGGCATCCCAATTATATCTCTGGTGATGATGTATTTCATCCGGGTGTGTACTCCA GCTTCCGGGGAAGACTCTTCAGTGCATGTCCATTTTGTTTTTACTCAGGCTGCAAGCGTTCTGCTTGCCATATATCTTCTCACAACCACAATAGTGACTG ATGTGTTTTCCATTGGCAATGCTGCTTCCTACACGTTGGTTGCTATAATGGTCGTTATTATGGCCTCTCCTCTGGTGATTCCTATTAAAATGACTCTCTT CCCTGCCAACCCTAAGAAACGCAACTCACCGAATTCTGCCTCGGACCTTCCTGCTCTTGCTGAAGGTGGTGAATCGACCACAACGGAGCCTTTGTTGGAA AAATCATCATCGGCGGCCTATCTTGGGAGTTTCCTTGAGAATGAGGATTCTTCAGATGTTGATACACTTCTTGCTGTTGGGGAGGGAGCTGTGAAGAAGA AAAGGAAACCCAAGAGAGGTGAGGACTTCAGATTTCGCGAGGCTCTAGTGAAAGCTGATTTCTGGCTTCTTTGGGTGGTATACTTTCTTGGAGTTGGTTC TGGAGTTACTGTCCTCAATAACTTGGCCCAGATCGGGATTGCATTTGGACTTAATGACACAACAATGCTGCTTGCCCTCTTCAGCTTCTGTAATTTTGCT GGACGCCTTGGATCCGGTGTTGTATCCGAGTACTTTGTCAGGTCAAGCACAACTCCGAGAACTGTGTGGATGACAGTTGCACAAGCAATCATGGTTGTAA TCTTTATCATGTTTGCTTTTGCCGTCAAGGGAGTTCTGTACGCAGCAACTGCTCTGATTGGTGTCTGTTATGGAATTCTCTATTCTGTGATGGTTCCAAC TGTTTCCGAGCTCTTCGGCCTGAGGCATTTTGGTATCATTTACAACTTTGTGCTATTAGGAAACCCCGTTGGTGCACTTCTCTTCTCAGGAGGACTCGCC GGTACAATGTATGATATAGAAGCTTCTAAGCAAGGAAGCTCCACCTGTGTAGGCCCTGATTGCTTTAAAGTGACGTTCCTGGCTCTTGCTGCCCTATGTG GACTGGGAACTCTCTTGAGCATAATATTGACGATGAGAATAAGGCCCGTTTACCAAATGCTTTATTCCGGGGGCTCTTTCTGCCTGGCACAAAGTTCTGG CCATTGA
AA sequence Show only first row Show all	>Lus10017971 pacid=23147969 polypeptide=Lus10017971 locus=Lus10017971.g ID=Lus10017971.BGIv1.0 annot-version=v1.0 MGMPNIVVKGGSRPPWVGLAAAVWVEVAAGNGYTFPLYSPALKSAMGLNQQQITMLGVANDIGESVGLLPGIACNKFPPWAVLFVGVVMCFLGYGVIFLT VSNTVAGLPYWLVWIALVIGTNSNAWFGTAVLVTNMRNFPLSRGTVSGILKGYVGLSAAVYTVLYNMVLKDSASDFVLMLTLGIPIISLVMMYFIRVCTP ASGEDSSVHVHFVFTQAASVLLAIYLLTTTIVTDVFSIGNAASYTLVAIMVVIMASPLVIPIKMTLFPANPKKRNSPNSASDLPALAEGGESTTTEPLLE KSSSAAYLGSFLENEDSSDVDTLLAVGEGAVKKKRKPKRGEDFRFREALVKADFWLLWVVYFLGVGSGVTVLNNLAQIGIAFGLNDTTMLLALFSFCNFA GRLGSGVVSEYFVRSSTTPRTVWMTVAQAIMVVIFIMFAFAVKGVLYAATALIGVCYGILYSVMVPTVSELFGLRHFGIIYNFVLLGNPVGALLFSGGLA GTMYDIEASKQGSSTCVGPDCFKVTFLALAALCGLGTLLSIILTMRIRPVYQMLYSGGSFCLAQSSGH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	0	1
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	1.0	0.9763
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	2.0	0.9262
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	3.9	0.9152
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	5.3	0.9049
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	5.5	0.9038
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	5.5	0.8848
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	5.5	0.8913
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	5.7	0.8839
AT4G34100			RING/U-box superfamily protein...		Lus10014076 [exp]	5.8	0.8837
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	7.5	0.8977

Compare expression of checked genes

Lus10017971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.