Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16390 952 / 0 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 749 / 0 CHR34 chromatin remodeling 34 (.1) AT1G05490 291 / 2e-82 CHR31 chromatin remodeling 31 (.1) AT3G24340 272 / 2e-76 CHR40 chromatin remodeling 40 (.1) AT5G20420 256 / 1e-70 CHR42 chromatin remodeling 42 (.1) AT3G42670 243 / 2e-66 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT3G32330 223 / 2e-65 DNA repair protein-related (.1) AT3G32280 166 / 6e-44 ATP-dependent helicase family protein (.1) AT3G31900 147 / 3e-38 ATP-dependent helicase family protein (.1) AT5G63950 126 / 2e-29 CHR24 chromatin remodeling 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041963 [exp] 1654 / 0 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 894 / 0 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10003003 [exp] 281 / 1e-79 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 280 / 1e-78 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10040956 [exp] 264 / 4e-73 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 257 / 4e-71 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10040136 [exp] 181 / 1e-46 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10015690 [exp] 120 / 2e-27 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10001090 [exp] 112 / 2e-27 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120700 [exp] 1124 / 0 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G159000 [exp] 948 / 0 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.014G050200 [exp] 287 / 3e-81 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 270 / 3e-75 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.004G159100 [exp] 228 / 4e-69 AT2G16390 210 / 1e-63 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 165 / 7e-44 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.003G110100 [exp] 125 / 5e-29 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.007G102800 [exp] 124 / 2e-28 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G066600 [exp] 123 / 2e-28 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.010G099000 [exp] 117 / 1e-26 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017973 pacid=23148002 polypeptide=Lus10017973 locus=Lus10017973.g ID=Lus10017973.BGIv1.0 annot-version=v1.0 ATGGTGGATTACTCTGATCCGTTTGCTGCATCCAATACGATCCAGATGCTTGAATCTGGAGTCTATGGAAGTGTTACTGAAGAAATCAAAGCTTTAGCTA CGCACAAGCTTCGGGTTTTGCAGCACTATCTGCAGAAGTATCCAACGCTTTCTAATATATTTTGGGACGAAGAGAAGATCTCAGCTGAAGATGCTGCAGA CGTACAGACTAACTTTGTTGATCTTGACGATGCAAATGTCCTACGTAGTGCTCCAGCTGCAGCAGATCGGATTGTAATCATTGACTCGGATGATGAAGAC AATCAAGATCGGCGGGTGGTTCTTCCATTCCAGGAGGTGGCCTTGCCAAAGCCCGATGGACAATTTGTCACCGAAAAGGAGTATAATGCCCTTCAAATGG ATATCAAGCAACGAGGAATGCCAACAAGGGTTGGTGTGGAACTGGGAGGCAAGAAAGAACGTGAGACCAAGAAAGAACTTGAGACCAAAAAAGAATTCGA TATAGAGAAGGATGAAGGGGCTTATGTTGGTGTCACCGATGATGACAATGACCATGCCGAGACTAATGACGACGGTCTCGGTGATATTTGGCAAGAAATG TCCCTGGCCTTGGAATGTGGCAAGGAGGTGGCAGAGCACCATTCATCTGATGATTACATAGAAGAGGATGATGAAGCGTGTGATCATTCTTTCATCTTAA AGGATGATATTGGTTATGTCTGCCGCATCTGTGGAGTTATCGAGCGAGGCATTGAGAGCATAATTGAAGTGCAATTTTATAAGGTATCAAGAGGTGTGAT TTATGTTGCTTTCTTAATGAACTCACATGAAATTATACATTTTCCATTGATGGGCTCTCAGCTGGTTCTTCCACTGAAATATGACCTAGCTGGTTATAAT CCACTTTGTTGTATATGTTTGCCAACTCAGGCAAAAAAGAGCACGAGAACCTCAATCAGTTCGCGGAATGCAAACCGAGATTCAAACGACGGAGTCGGAA TTCAACTGTCCGAAGAAGACCTGATGGTGACTGATATCTATGCCCACCCAAGACACAAGAAAAAGATGAAACCTCATCAGGTGGAGGGTTTCAATTTTCT TTGCAGTAACCTAGTAGCAGATAATCCCGGAGGCTGCATATTGGCTCATGCACCTGGGTCCGGGAAGACATTTATGATTATAAGTTTCATGCAAAGCTTT CTAGCCAAATATCCTCACGGCAGACCTTTGGTGGTTCTCCCAAAAGGGATATTAACTACATGGAAGAAGGAGTTTCAAATATGGCAAGTCGAAGATATCC CATTGTACGACTTTTATAGCGTGAAAGCTGATAGCAGACAGCAGCAGCTGGAAGTTTTAAAGCAGTGGGTGGAGGAGAAGAGTATTCTCTTCTTAGGTTA CAAACAGTTCTCTGCTATCATTTGCGACAGTGGAAACAGCACAACTGCAGCTAGTTGTCGAGAGATATTGCTCAAAAGACCGTCGATTCTCATTTTGGAC GAAGGGCACACTCCTAGAAACGAAAATACCGACGTTTTGCAATCTCTCGCCAAAGTGCAGACTCCTCGGAAGGTTGTGCTCTCCGGAACCCTGTACCAGA ATCACGTAAAGGAGGTATTCAACGTGCTGAATCTTGTTCGTCCAAAGTTTCTGAGGTTGGACGATTCGAAAGGCATTGTGAAGCGCATCTTGAGTAAAGT GAACATATCTGGGCTCAAGAAGAACATTAAATCCGGTGTCGATGCGACATTTTACGAACTGGTGGAGCACACAATCCAGAAAGATCCCGATTTCAAAAGG AAAGTGTCGATCATCCACGACCTCCGCGAGATGACTAGCAAGGTCCTGCACTATTATAAAGGAGATTTCTTGGACGAGCTTCCTGGACTGGTCGATTTCA CTGTGGTGCTTAACTTAAGTAAAAGGCAGAAGCACGAGGTCGAAAAGTTGAAGAAACTGTCGAGAAAGTTTAAACGAAGTGCCGTCGGAAGTGCTGTTTA TCTCCATCCGAAACTGAACTCGTTCCCCGACAATGTTTCTGTTACAGACGGTATGATGGACGAGCTATTAAGTAGCTTGAACTTGAGAGATGGGGTGAAA GCGAGCTTCTTTCTCAGTATGTTACGTTTATGTGAGGCGTCGGGGGAGAAGCTACTGGTATTCAGTCAGTACCTAACCCCATTGAAGTTTCTCGAGAGAC TTGTGGCGAGGGAGAAAGGTTGGGCGTTAGGGAAGGAAATCTTCGTGATCTCGGGTGATACGAGTTCTGAGCAGAGAGAGTTGTCGATGGATCGGTTCAA CAACTCGTCCGATGCGAGAGTTTTCTTCGGGTCGATTAAGGCCTGCGGAGAGGGGATTTCCTTGGTAGGCGCGTCTCGGATCCTAATATTGGATGTCCAT CTTAACCCATCGGTTACTCGCCAGGCGATTGGGCGAGCCTTCCGACCCGGTCAGCTGAAGAAAGTATACGCTTATCGTTTGGTGGCTGCTGATTCGCCCG AGGAGAAAGATCACAGCACTTGCTTCAGGAAGGAGGCGATTGCGAAAATGTGGTTCGAGTGGAACGAGTACTGTGGTTACCAGAATTTCGAAGTCGAACA AATCGACTTGACCGAGTCTGGTGATCCGTTCTTGGACAGTCCTATGGTAAAGGAAGATGTTAGGGTTCTTTTCAGAAGGTTATCATCTATCTACCCTCAA TGTTATTTGCATCAAAAGAATCTACTAATCAAAGTTTTGCTTACAAGTGATTTCTTTCGAATTTCAGGTGACCACAAATCGGATCGTCGAATCTCGTTAT TGTCAGGAGGAGCAGATTTTATGAACTGTCGACAATTTTTTTTGTTAAAGCTATGCTCTGTCTGTATATAG
AA sequence Show only first row Show all	>Lus10017973 pacid=23148002 polypeptide=Lus10017973 locus=Lus10017973.g ID=Lus10017973.BGIv1.0 annot-version=v1.0 MVDYSDPFAASNTIQMLESGVYGSVTEEIKALATHKLRVLQHYLQKYPTLSNIFWDEEKISAEDAADVQTNFVDLDDANVLRSAPAAADRIVIIDSDDED NQDRRVVLPFQEVALPKPDGQFVTEKEYNALQMDIKQRGMPTRVGVELGGKKERETKKELETKKEFDIEKDEGAYVGVTDDDNDHAETNDDGLGDIWQEM SLALECGKEVAEHHSSDDYIEEDDEACDHSFILKDDIGYVCRICGVIERGIESIIEVQFYKVSRGVIYVAFLMNSHEIIHFPLMGSQLVLPLKYDLAGYN PLCCICLPTQAKKSTRTSISSRNANRDSNDGVGIQLSEEDLMVTDIYAHPRHKKKMKPHQVEGFNFLCSNLVADNPGGCILAHAPGSGKTFMIISFMQSF LAKYPHGRPLVVLPKGILTTWKKEFQIWQVEDIPLYDFYSVKADSRQQQLEVLKQWVEEKSILFLGYKQFSAIICDSGNSTTAASCREILLKRPSILILD EGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLRLDDSKGIVKRILSKVNISGLKKNIKSGVDATFYELVEHTIQKDPDFKR KVSIIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLSKRQKHEVEKLKKLSRKFKRSAVGSAVYLHPKLNSFPDNVSVTDGMMDELLSSLNLRDGVK ASFFLSMLRLCEASGEKLLVFSQYLTPLKFLERLVAREKGWALGKEIFVISGDTSSEQRELSMDRFNNSSDARVFFGSIKACGEGISLVGASRILILDVH LNPSVTRQAIGRAFRPGQLKKVYAYRLVAADSPEEKDHSTCFRKEAIAKMWFEWNEYCGYQNFEVEQIDLTESGDPFLDSPMVKEDVRVLFRRLSSIYPQ CYLHQKNLLIKVLLTSDFFRISGDHKSDRRISLLSGGADFMNCRQFFLLKLCSVCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10017973 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	4.1	0.8823
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	4.5	0.8598
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	6.7	0.8589
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	7.2	0.8773
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10008637 [exp]	9.8	0.8449
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	12.7	0.8720
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	16.8	0.8466
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	20.1	0.8367
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	23.7	0.8220
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	25.1	0.7809

Compare expression of checked genes

Lus10017973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.